View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12798_low_1 (Length: 703)

Name: NF12798_low_1
Description: NF12798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12798_low_1
NF12798_low_1
[»] chr5 (1 HSPs)
chr5 (15-688)||(33054496-33055169)


Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 15 - 688
Target Start/End: Original strand, 33054496 - 33055169
Alignment:
Q  15 aacatgaacaaaaacatcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttccatca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33054496 aacatgaacaaaaacatcatcgtacaccctttaactttctttaccttattcttttccattatcactttcactcactcccaaaccaacgatgcttccatca 33054595  T
Q  115 tgcaaaccctaaaaaacaaccttaaaccgcctctttcacttggttggtccgacccggatccatgtaaatggacccacgtttcttgttctgacgacaaccg 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33054596 tgcaaaccctaaaaaacaaccttaaaccgcctctttcgcttggttggtccgacccggatccatgtaaatggacccacgtttcttgttccgacgacaaccg 33054695  T
Q  215 tgtaacgagaatccaaatcggtcgccagaatctccatggcacacttcctcaaacccttcaaaaccttaccaacttacaacacctagagcttcaattcaac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33054696 tgtaacgagaatccaaatcggtcgccagaatctccatggcacacttcctcaaacccttcaaaaccttaccaacttacaacacctagagcttcaattcaac 33054795  T
Q  315 aacttcacaggtccacttccaagcttaaacggtttaaactctcttcaagttttcatggcgagtggtaacagtttttcatcttttcctagtgannnnnnng 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       |    
T  33054796 aacttcacaggtccacttccaagcttaaacggtttaaactctcttcaagttttcatggcgagtggtaacagtttttcatcgtttcctagtgatttttttg 33054895  T
Q  415 ctggtatgtctcagcttgtttctgttgagattgatgataacccttttgagccatgggagattcctgtgtctttgaaagatgcttcttctcttcagaattt 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33054896 ctggtatgtctcagcttgtttctgttgagattgatgataacccttttgagccatgggagattcctgtgtctttgaaagatgcttcttctcttcagaattt 33054995  T
Q  515 ttctgctaataatgctaatgtgaagggtaagttacctgannnnnnnagtgatgaggtttttcctggtttgacccttttgcatttagcttttaataaactt 614  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33054996 ttctgctaataatgctaatgtgaagggtaagttacctgatttttttagtgatgaggtttttcctggtttgacccttttgcatttagcttttaataaactt 33055095  T
Q  615 gaaggtgtgttgccaaaggggtttaatggattaaaagttgagtctttgtggttgaatggtcagaagagtgatgt 688  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33055096 gaaggtgtgttgccaaaggggtttaatggattaaaggttgagtctttgtggttgaatggtcagaagagtgatgt 33055169  T

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