View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12798_low_2 (Length: 348)
Name: NF12798_low_2
Description: NF12798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12798_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 26080769 - 26080438
Alignment:
| Q |
8 |
gacatcaacacatgactgcatgcaatgcaaccgttagttaaacgatgagtgacactgaccttgggaaatccaacaattggacttgcggtaagaatagttc |
107 |
Q |
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| T |
26080769 |
gacatgaacacatgactgcatgcaatgcaaccgttagttaaacggtgagtgacactgaccttgggaaatccaacaattggacttgcggtaagaatagttc |
26080670 |
T |
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| Q |
108 |
gctgcagtgtgctagtccatatctagatcaccagttacaaatataaaaaatcactcatcgtttcagtatttgtcaacaacattttataaatgaactaagc |
207 |
Q |
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| T |
26080669 |
gctgcagtgtgctagtccatatctagatcaccagttacaaatataaaaaatcactcatcgtttcagtatttgtcaacaacattttataaatgaactaagc |
26080570 |
T |
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| Q |
208 |
tgatatcagaactgatttggcgttatgtttttccaacatgtacaagaaaatgctgttatag--taggagatatgaaaaatcattttcatatcgtcacaaa |
305 |
Q |
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| T |
26080569 |
tgatatcagaactgattcggcgttatgtttttccaacatgtacaagaaaatgctgttatagtataggagatatgaaaa-----------atcgtcacaaa |
26080481 |
T |
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| Q |
306 |
tttcaatgcagcttaccagaggggaagggacaagaaatgttac |
348 |
Q |
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| T |
26080480 |
tttcaatgcagcttaccagaggggaagggacaagaaatgttac |
26080438 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 30598273 - 30598196
Alignment:
| Q |
57 |
tgacactgaccttgggaaatccaacaattggacttgcggtaagaatagttcgctgcagtgtgctagtccatatctaga |
134 |
Q |
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| T |
30598273 |
tgacactaaccttaggaaatccaacaatggggcctgctgtcagaattgttcgctgtagtgtactggtccatatctaga |
30598196 |
T |
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