View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12798_low_4 (Length: 268)
Name: NF12798_low_4
Description: NF12798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12798_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 226
Target Start/End: Complemental strand, 49655069 - 49654859
Alignment:
| Q |
14 |
aggctattagaacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgta |
113 |
Q |
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| T |
49655069 |
aggctattagaacatcatttacagtttagtccaaaatcaaaataagctaaagctatgagcagagcatttccagtgttaagactaagatcttctaaatgta |
49654970 |
T |
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| Q |
114 |
aaattagccccccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaa |
213 |
Q |
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| T |
49654969 |
aaattag--ccccgactaaactaaggacataaaccacatactataagctaaacttgtgtcaattacaaaattaccataacaaaactatcctataacagaa |
49654872 |
T |
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| Q |
214 |
caaacaaaatcag |
226 |
Q |
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||||||||||||| |
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| T |
49654871 |
caaacaaaatcag |
49654859 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 8551505 - 8551537
Alignment:
| Q |
84 |
cagtgttaagactaagatcttctaaatgtaaaa |
116 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
8551505 |
cagtgtcaagactaagatcttctaaatgtaaaa |
8551537 |
T |
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