View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12798_low_7 (Length: 216)
Name: NF12798_low_7
Description: NF12798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12798_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 10257571 - 10257386
Alignment:
| Q |
21 |
acaccaaccaccacagtacggccaccggaggcaccattgtaggtggtgatcattttggtgatgacacgtggcagtatctatatatgtcaa--agagagtt |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
10257571 |
acaccaacaaccacagtacggccaccggaggcaccgttgtaggtggtgatcattttgatgatgacacgtggcagtatctatatatatgaatgagagagtt |
10257472 |
T |
|
| Q |
119 |
ggttgatgtcgttatgttgtcggtgattggaggatgtagtgtaagtgtcggtgattatacacatgcaaccaaaaatgtcacaggtt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10257471 |
ggttgatgtcgttatgttgtcggtgattggaggatgtagtgtaagtgtcggtgattatacacatgcaaccaaaaatgtcacaggtt |
10257386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University