View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12799_low_1 (Length: 384)

Name: NF12799_low_1
Description: NF12799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12799_low_1
NF12799_low_1
[»] chr1 (47 HSPs)
chr1 (55-214)||(10577680-10577839)
chr1 (63-221)||(1486657-1486820)
chr1 (55-149)||(5898211-5898305)
chr1 (55-214)||(42359394-42359553)
chr1 (63-221)||(2896074-2896232)
chr1 (55-177)||(37598824-37598945)
chr1 (55-121)||(25934675-25934741)
chr1 (55-149)||(51410045-51410139)
chr1 (55-147)||(12918967-12919059)
chr1 (64-151)||(40181889-40181976)
chr1 (63-149)||(18190061-18190147)
chr1 (55-149)||(18337349-18337443)
chr1 (63-149)||(40258886-40258972)
chr1 (55-150)||(29163326-29163421)
chr1 (55-122)||(32461398-32461465)
chr1 (63-214)||(41597423-41597574)
chr1 (64-149)||(1815277-1815362)
chr1 (55-151)||(36878479-36878580)
chr1 (55-189)||(46348328-46348462)
chr1 (63-151)||(30749858-30749946)
chr1 (63-151)||(30771309-30771397)
chr1 (55-187)||(22515832-22515964)
chr1 (55-121)||(9828103-9828169)
chr1 (114-177)||(25934608-25934671)
chr1 (117-214)||(398772-398869)
chr1 (111-151)||(34371731-34371771)
chr1 (111-151)||(44482248-44482288)
chr1 (112-151)||(1864882-1864921)
chr1 (119-187)||(12443469-12443537)
chr1 (159-206)||(40917714-40917761)
chr1 (72-151)||(43492456-43492535)
chr1 (105-151)||(2784574-2784620)
chr1 (95-149)||(13997903-13997957)
chr1 (105-151)||(23636044-23636090)
chr1 (55-149)||(38078606-38078700)
chr1 (55-121)||(40917808-40917874)
chr1 (55-121)||(47989556-47989622)
chr1 (112-210)||(10572591-10572689)
chr1 (102-151)||(14332634-14332683)
chr1 (63-151)||(27965953-27966039)
chr1 (97-134)||(39130754-39130791)
chr1 (104-149)||(52903269-52903314)
chr1 (111-151)||(7918212-7918252)
chr1 (104-148)||(13436479-13436523)
chr1 (111-151)||(20157351-20157391)
chr1 (111-151)||(25361904-25361944)
chr1 (95-151)||(28674818-28674874)
[»] chr3 (38 HSPs)
chr3 (55-151)||(13845470-13845566)
chr3 (55-177)||(35222930-35223052)
chr3 (55-151)||(2941576-2941672)
chr3 (55-204)||(55401040-55401189)
chr3 (57-214)||(15999957-16000120)
chr3 (63-149)||(40993288-40993374)
chr3 (63-205)||(28917965-28918109)
chr3 (55-151)||(8789493-8789591)
chr3 (65-177)||(10954944-10955056)
chr3 (58-186)||(18426932-18427060)
chr3 (111-151)||(14028025-14028065)
chr3 (63-214)||(7171457-7171607)
chr3 (55-149)||(20503485-20503579)
chr3 (89-151)||(25093520-25093582)
chr3 (159-214)||(10335335-10335390)
chr3 (104-149)||(7928470-7928515)
chr3 (95-151)||(11251996-11252050)
chr3 (56-121)||(25064966-25065031)
chr3 (55-147)||(25775531-25775621)
chr3 (57-145)||(3631708-3631796)
chr3 (115-212)||(4990972-4991069)
chr3 (55-122)||(25074841-25074909)
chr3 (240-280)||(46299764-46299804)
chr3 (55-150)||(8842348-8842443)
chr3 (81-120)||(14338454-14338493)
chr3 (80-151)||(45451571-45451642)
chr3 (63-121)||(4987233-4987291)
chr3 (55-121)||(14209172-14209238)
chr3 (53-115)||(16192665-16192727)
chr3 (105-151)||(20691337-20691383)
chr3 (55-121)||(41961584-41961650)
chr3 (25-55)||(46299717-46299747)
chr3 (159-214)||(750667-750723)
chr3 (95-135)||(6780404-6780444)
chr3 (55-115)||(14216957-14217017)
chr3 (55-115)||(14223086-14223146)
chr3 (55-115)||(27505305-27505365)
chr3 (303-331)||(46300108-46300136)
[»] chr8 (34 HSPs)
chr8 (55-214)||(43737756-43737917)
chr8 (55-149)||(3951481-3951575)
chr8 (55-121)||(34450966-34451032)
chr8 (55-214)||(926733-926892)
chr8 (55-151)||(3025569-3025665)
chr8 (63-151)||(20679348-20679436)
chr8 (58-151)||(14134717-14134810)
chr8 (63-189)||(36450707-36450833)
chr8 (56-151)||(33405330-33405425)
chr8 (111-150)||(34451038-34451077)
chr8 (55-121)||(29510238-29510304)
chr8 (63-149)||(31557016-31557102)
chr8 (111-221)||(2572057-2572167)
chr8 (58-151)||(40332209-40332302)
chr8 (63-135)||(8293859-8293931)
chr8 (96-151)||(4786324-4786379)
chr8 (164-221)||(24857957-24858014)
chr8 (55-151)||(26902109-26902216)
chr8 (103-189)||(31236570-31236656)
chr8 (95-147)||(9414860-9414912)
chr8 (55-134)||(5813627-5813706)
chr8 (159-214)||(22651931-22651986)
chr8 (58-132)||(126295-126369)
chr8 (111-149)||(11927087-11927125)
chr8 (105-151)||(13844591-13844637)
chr8 (55-121)||(22652035-22652101)
chr8 (105-151)||(34897103-34897149)
chr8 (111-148)||(8847277-8847314)
chr8 (106-151)||(12606825-12606870)
chr8 (95-151)||(37283797-37283851)
chr8 (81-130)||(44462166-44462215)
chr8 (81-130)||(44469699-44469748)
chr8 (159-211)||(24196646-24196698)
chr8 (55-151)||(31580072-31580168)
[»] chr2 (32 HSPs)
chr2 (55-151)||(24009314-24009409)
chr2 (63-191)||(20242680-20242808)
chr2 (55-134)||(18840958-18841037)
chr2 (55-149)||(2438664-2438758)
chr2 (55-180)||(36096309-36096445)
chr2 (55-135)||(28596503-28596583)
chr2 (55-191)||(15972851-15972987)
chr2 (55-149)||(12224243-12224337)
chr2 (111-213)||(34784983-34785085)
chr2 (55-132)||(34993927-34994004)
chr2 (95-221)||(40361739-40361865)
chr2 (69-148)||(5367213-5367292)
chr2 (58-149)||(5040754-5040845)
chr2 (64-151)||(37411198-37411285)
chr2 (111-213)||(18054804-18054907)
chr2 (59-145)||(29176442-29176528)
chr2 (55-120)||(26769571-26769636)
chr2 (63-188)||(41843422-41843552)
chr2 (55-135)||(21091757-21091837)
chr2 (96-151)||(18276539-18276594)
chr2 (70-149)||(31808097-31808176)
chr2 (55-121)||(30717464-30717530)
chr2 (55-121)||(35056927-35056993)
chr2 (55-121)||(37419802-37419868)
chr2 (55-149)||(37558997-37559091)
chr2 (81-149)||(28677929-28678002)
chr2 (104-149)||(34691799-34691844)
chr2 (104-149)||(34714211-34714256)
chr2 (110-151)||(38355887-38355928)
chr2 (111-151)||(18889592-18889632)
chr2 (89-149)||(30404829-30404889)
chr2 (111-151)||(44860338-44860378)
[»] chr6 (39 HSPs)
chr6 (55-214)||(18367792-18367961)
chr6 (55-205)||(34595098-34595248)
chr6 (55-214)||(8776913-8777077)
chr6 (55-216)||(16488524-16488690)
chr6 (55-191)||(9658857-9658994)
chr6 (55-149)||(13789174-13789268)
chr6 (55-149)||(13797793-13797887)
chr6 (55-149)||(28152118-28152212)
chr6 (111-221)||(16766645-16766755)
chr6 (63-115)||(12696383-12696435)
chr6 (63-191)||(16833286-16833414)
chr6 (55-134)||(32978844-32978923)
chr6 (63-210)||(853812-853959)
chr6 (55-149)||(33001234-33001328)
chr6 (111-213)||(9027134-9027236)
chr6 (98-150)||(7740660-7740712)
chr6 (105-214)||(7938071-7938180)
chr6 (55-151)||(13360318-13360413)
chr6 (55-151)||(7996327-7996419)
chr6 (55-151)||(8022382-8022474)
chr6 (55-174)||(17327595-17327719)
chr6 (100-151)||(19040370-19040421)
chr6 (105-151)||(7265588-7265634)
chr6 (101-151)||(7377997-7378047)
chr6 (110-201)||(19044432-19044523)
chr6 (55-149)||(28715315-28715409)
chr6 (95-132)||(30851637-30851674)
chr6 (100-177)||(5626686-5626763)
chr6 (111-151)||(9025495-9025535)
chr6 (89-149)||(24645501-24645561)
chr6 (111-149)||(7027262-7027300)
chr6 (55-121)||(8365453-8365519)
chr6 (55-121)||(10339059-10339125)
chr6 (55-109)||(31384990-31385044)
chr6 (164-221)||(426568-426625)
chr6 (95-151)||(31579212-31579266)
chr6 (111-151)||(9617452-9617492)
chr6 (111-151)||(9629401-9629441)
chr6 (111-151)||(26562707-26562747)
[»] scaffold0652 (1 HSPs)
scaffold0652 (55-214)||(407-566)
[»] chr5 (35 HSPs)
chr5 (55-214)||(6401453-6401623)
chr5 (55-133)||(30098983-30099061)
chr5 (55-216)||(21814220-21814386)
chr5 (55-212)||(21191001-21191158)
chr5 (55-151)||(30502333-30502429)
chr5 (55-151)||(30542676-30542772)
chr5 (55-149)||(21576690-21576784)
chr5 (57-177)||(42029744-42029864)
chr5 (54-135)||(26312803-26312884)
chr5 (55-149)||(43564901-43564995)
chr5 (95-151)||(18421826-18421882)
chr5 (89-149)||(42893380-42893440)
chr5 (95-214)||(6770498-6770615)
chr5 (100-151)||(28588664-28588715)
chr5 (111-210)||(37328845-37328944)
chr5 (55-125)||(39268543-39268613)
chr5 (165-210)||(42469180-42469225)
chr5 (111-151)||(3966521-3966561)
chr5 (55-151)||(21194068-21194164)
chr5 (57-121)||(21522809-21522873)
chr5 (57-121)||(21533375-21533439)
chr5 (57-121)||(21542089-21542153)
chr5 (55-151)||(27932253-27932349)
chr5 (159-214)||(15382432-15382487)
chr5 (159-214)||(21522705-21522760)
chr5 (159-214)||(21533271-21533326)
chr5 (159-214)||(41995426-41995481)
chr5 (82-132)||(23012380-23012430)
chr5 (100-149)||(15884008-15884057)
chr5 (63-132)||(32630688-32630757)
chr5 (114-151)||(39758290-39758327)
chr5 (111-151)||(6471890-6471930)
chr5 (55-151)||(17123066-17123161)
chr5 (55-115)||(30098391-30098451)
chr5 (111-151)||(41091258-41091298)
[»] chr4 (35 HSPs)
chr4 (55-202)||(5414106-5414264)
chr4 (55-213)||(23292931-23293089)
chr4 (63-149)||(49431046-49431132)
chr4 (55-213)||(12895219-12895377)
chr4 (55-221)||(36635272-36635444)
chr4 (55-121)||(30982812-30982878)
chr4 (95-214)||(35157970-35158089)
chr4 (77-151)||(9996858-9996932)
chr4 (55-109)||(19482739-19482793)
chr4 (55-149)||(34306749-34306843)
chr4 (95-149)||(54580008-54580062)
chr4 (75-151)||(19097859-19097935)
chr4 (55-151)||(35161054-35161150)
chr4 (58-116)||(848015-848073)
chr4 (89-151)||(8402721-8402783)
chr4 (81-151)||(8423689-8423759)
chr4 (55-121)||(12323968-12324034)
chr4 (55-149)||(12797283-12797377)
chr4 (103-141)||(20950420-20950458)
chr4 (55-121)||(22234824-22234890)
chr4 (63-149)||(28964201-28964287)
chr4 (55-120)||(24613635-24613700)
chr4 (100-149)||(40179626-40179675)
chr4 (55-115)||(3947706-3947766)
chr4 (81-149)||(29205464-29205532)
chr4 (55-134)||(2361920-2361999)
chr4 (111-214)||(13783236-13783339)
chr4 (55-109)||(29205528-29205582)
chr4 (95-149)||(36509077-36509131)
chr4 (75-121)||(44362714-44362760)
chr4 (55-149)||(715550-715646)
chr4 (55-149)||(752876-752972)
chr4 (110-151)||(5775358-5775399)
chr4 (63-151)||(30103310-30103397)
chr4 (115-151)||(40613468-40613504)
[»] scaffold0116 (1 HSPs)
scaffold0116 (111-214)||(9853-9956)
[»] chr7 (31 HSPs)
chr7 (63-213)||(18212986-18213137)
chr7 (55-151)||(32287408-32287504)
chr7 (72-151)||(39138462-39138541)
chr7 (55-132)||(598245-598322)
chr7 (63-151)||(27093366-27093454)
chr7 (63-151)||(27184847-27184935)
chr7 (58-145)||(33994236-33994323)
chr7 (81-151)||(5835265-5835335)
chr7 (55-149)||(15680829-15680923)
chr7 (100-148)||(640134-640182)
chr7 (55-151)||(20549809-20549905)
chr7 (55-151)||(21880170-21880266)
chr7 (100-151)||(9482952-9483003)
chr7 (55-149)||(43027409-43027508)
chr7 (111-210)||(27945000-27945099)
chr7 (63-151)||(12278853-12278941)
chr7 (55-115)||(32093959-32094020)
chr7 (55-115)||(5409776-5409836)
chr7 (55-115)||(9778559-9778619)
chr7 (111-151)||(22602711-22602751)
chr7 (58-121)||(26033398-26033461)
chr7 (111-214)||(1433409-1433512)
chr7 (115-214)||(21140987-21141086)
chr7 (63-177)||(22868034-22868153)
chr7 (164-214)||(23859985-23860035)
chr7 (55-121)||(24339701-24339767)
chr7 (63-149)||(26733324-26733410)
chr7 (63-151)||(1401043-1401129)
chr7 (81-134)||(21864843-21864896)
chr7 (90-135)||(22484059-22484104)
chr7 (182-214)||(9408413-9408445)
[»] scaffold0053 (1 HSPs)
scaffold0053 (55-221)||(8746-8912)
[»] scaffold0306 (1 HSPs)
scaffold0306 (55-210)||(13359-13520)
[»] scaffold0152 (1 HSPs)
scaffold0152 (55-210)||(21807-21968)
[»] scaffold0050 (1 HSPs)
scaffold0050 (55-149)||(70298-70392)
[»] scaffold0623 (2 HSPs)
scaffold0623 (111-151)||(5997-6037)
scaffold0623 (57-108)||(5932-5983)
[»] scaffold0361 (1 HSPs)
scaffold0361 (55-179)||(14520-14641)
[»] scaffold0022 (1 HSPs)
scaffold0022 (89-151)||(90861-90923)
[»] scaffold0279 (1 HSPs)
scaffold0279 (95-151)||(17788-17844)
[»] scaffold0083 (1 HSPs)
scaffold0083 (55-135)||(45475-45555)
[»] scaffold0021 (1 HSPs)
scaffold0021 (113-221)||(130430-130538)
[»] scaffold0003 (1 HSPs)
scaffold0003 (55-121)||(241653-241719)
[»] scaffold0793 (1 HSPs)
scaffold0793 (55-149)||(4826-4922)
[»] scaffold0380 (1 HSPs)
scaffold0380 (55-108)||(8662-8715)
[»] scaffold0123 (1 HSPs)
scaffold0123 (114-151)||(44529-44566)
[»] scaffold0086 (1 HSPs)
scaffold0086 (56-121)||(2987-3052)
[»] scaffold0036 (1 HSPs)
scaffold0036 (111-151)||(9748-9788)
[»] scaffold0020 (1 HSPs)
scaffold0020 (111-151)||(135313-135353)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 10577680 - 10577839
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||| | | |||||||||||||||||||||||||||||||||||||       
T  10577680 aagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccgcccccgacacatataattacactgcattttgtgattttctaaa 10577779  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
        |||| |||||||||||||| || |||||||||| | ||||||||||||||||||||    
T  10577780 aaaattagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 10577839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 1486657 - 1486820
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----tgacaccgacacatataattacactgcattttgtgattttctnnnnnn 157  Q
    |||||||| |||| ||| ||||||| ||||| |||||||||||||||      ||||||||||| ||||||||||||| ||| ||||||||| |          
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattttttcaaatt 1486756  T
Q  158 nttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 221  Q
     |||| |||||| ||||||| ||||||||||||| | |||| ||||||||||||||||| ||||    
T  1486757 attagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgtgtccgtatccatgcttc 1486820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 5898211 - 5898305
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||  ||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgatttt 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 42359394 - 42359553
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||||  ||| |||| ||||||||||| | ||||||||||| ||||||||||||| |       
T  42359394 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa 42359493  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
        |||| |||||| ||||||| || ||||||| || | |||||| |||||||||||||    
T  42359494 attattagatgtgtcagcgtgtcagtgtccgtgttgtgtacggtgttcgtgtccgtatcc 42359553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 2896074 - 2896232
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 162  Q
    ||||| ||||||| ||||||||||| || || ||||| |||||||||||||||||||| |||||  ||||||| ||| |||||||||||       ||||    
T  2896074 acacttcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattag 2896173  T
Q  163 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 221  Q
      ||||||||||||| || ||||||| || | || |||||||| | |||||| ||||||    
T  2896174 cggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtgactgtatccgttcttc 2896232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 37598945 - 37598824
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||| |||||||  |||| ||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||| |       
T  37598945 aagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacactg-aatttgtgattttttcaa 37598847  T
Q  155 nnnnttagttgtgtcggcgtgtc 177  Q
        |||||||||||||||||||    
T  37598846 attattagttgtgtcggcgtgtc 37598824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 25934741 - 25934675
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||    
T  25934741 aagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacac 25934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 51410139 - 51410045
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||| ||||||||||| ||| ||||| | ||||| || |||||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  51410139 aagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 51410045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 12919059 - 12918967
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatt 147  Q
    ||||||||||||| || |||||||  ||||||||||||| ||||||||||||||| || ||| ||||||||||| ||| || ||| |||||||    
T  12919059 aagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtccgataccaacacatataatcacattgaattatgtgatt 12918967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 40181976 - 40181889
Alignment:
Q  64 cactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||| ||| ||||||| ||||  ||||||||| ||||| |||||||| |||||||||||||||| ||| |||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttct 40181889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 18190061 - 18190147
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||| |||| ||||||||||| ||||| ||||||||| |||||||||| |||||| | ||||||||||| ||| ||| |||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaatttt 18190147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 18337443 - 18337349
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| |||  |||||| ||||| ||||||||| ||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  18337443 aagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 18337349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 40258886 - 40258972
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||| |||| ||| ||||||  ||||| |||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||    
T  40258886 acactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgatttt 40258972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 29163326 - 29163421
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttc 150  Q
    ||||||||||||| ||  ||| ||  ||||||| ||||| | ||||||||||||| |||||||||||||||||||| | || ||| ||||||||||    
T  29163326 aagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttc 29163421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 32461398 - 32461465
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacaca 122  Q
    ||||||| ||||| ||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  32461398 aagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacaca 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 41597423 - 41597574
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacac-tgcattttgtgattttctnnnnnnntta 161  Q
    ||||||||||||||| | || |||||||||| ||||||||||||||| ||||| |||||| | |   |||| |  |||||||||||||||       |||    
T  41597423 acactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacacggacaca-acaccaacacatatattttgtgattttctagaaaattta 41597521  T
Q  162 gttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    | ||||| |||||||| || |||||||||| || ||||||||| |||||||||    
T  41597522 gctgtgttggcgtgtcggtgtccgtgtcgtgtttggtgtccgtatccgtatcc 41597574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 1815362 - 1815277
Alignment:
Q  64 cactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||  ||| ||| ||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  1815362 cactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgatttt 1815277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 36878580 - 36878479
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtcc-----gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| |||||||||||||      |||| || ||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  36878580 aagcacggacactcctgggattaggcgtgtccccgtgtcgtgtcggacatgtttcgtgtcagacaccgacacctataattacactgaattatgtgatttt 36878481  T
Q  150 ct 151  Q
    ||    
T  36878480 ct 36878479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 46348328 - 46348462
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||| ||| |||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | ||||||||||  ||| | ||||||| |       
T  46348328 aagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatgattttttcaa 46348427  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtc 189  Q
        |||| |||||||||||||| || ||||||||    
T  46348428 attattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 30749946 - 30749858
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| | |||| | || ||| ||||||  |||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  30749946 acactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 30771397 - 30771309
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| | |||| | || ||| ||||||  |||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  30771397 acactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 22515832 - 22515964
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||| ||||| | ||||| || | |||||||||| ||||||||||| | ||||||||||  ||| ||||||||| |       
T  22515832 aagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaa 22515931  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtg 187  Q
        |||| |||||| |||||||||| ||||||    
T  22515932 attattagctgtgtctgcgtgtccgtgtccgtg 22515964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 9828169 - 9828103
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||||| |||| ||  ||||||| ||||| ||||||||||||||||||||| |||||    
T  9828169 aagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacac 9828103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 25934671 - 25934608
Alignment:
Q  114 accgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 177  Q
    |||||||||||||||||||||| |||||||||||||||       |||| ||||||||||||||    
T  25934671 accgacacatataattacactgtattttgtgattttctagaaaatttagctgtgtcggcgtgtc 25934608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 398772 - 398869
Alignment:
Q  117 gacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    ||||| ||||||||||||| ||| ||||||||| |       ||||  ||||||||||||| || |||||||||| | ||||||||| ||||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatcc 398869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 34371771 - 34371731
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  34371771 gacaccgacacatataattacactgaattatgtgattttct 34371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 44482288 - 44482248
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttct 44482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 1864882 - 1864921
Alignment:
Q  112 acaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  1864882 acaccgacacatataattacactgaattatgtgattttct 1864921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 12443469 - 12443537
Alignment:
Q  119 cacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 187  Q
    |||||| |||||||||| ||| |||||||||||       |||| ||||||||||||||||||||||||    
T  12443469 cacatacaattacactgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtatccgtg 12443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 40917761 - 40917714
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgt 206  Q
    |||| |||||||||||||| ||||||||||||| | ||||||||||||    
T  40917761 ttagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgt 40917714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 43492456 - 43492535
Alignment:
Q  72 ggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| ||| |||| || ||||| |||| |||| |||||||||||||||||| |||||||||| | |||  ||||||||||    
T  43492456 ggattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataattacaccgaattacgtgattttct 43492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 2784620 - 2784574
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||||||| |||  ||| |||||||||||    
T  2784620 gtgtctgacaccgacacatataattatactcaattatgtgattttct 2784574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 13997957 - 13997903
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||| ||||||| ||  |||||||||||||||||||||||| ||| |||||||||    
T  13997957 gacatgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttt 13997903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 23636044 - 23636090
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||| |||||||||| ||| ||| |||||||    
T  23636044 gtgtctgacaccgacacatacaattacactgaattatgtaattttct 23636090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 38078606 - 38078700
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||| |||||| |||| ||| ||||||  ||||   ||| |||||||||| ||||||||||| | |||||||| || ||| |||||||||    
T  38078606 aagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 38078700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 40917874 - 40917808
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||| |||| |||| ||| ||||||| ||||| |||||||||||||||  ||||||||||    
T  40917874 aagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacac 40917808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 47989622 - 47989556
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||||| |||| ||| |||||||  |||| |||| |||||||||| |||||||||||    
T  47989622 aagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacac 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 10572591 - 10572689
Alignment:
Q  112 acaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    |||||||||||| ||||||||| | ||| |||||||||||       ||||| ||||||||||||| || | | |||||| | |||||||||| |||||    
T  10572591 acaccgacacatttaattacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgt 10572689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 14332634 - 14332683
Alignment:
Q  102 gtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  14332634 gtcgtgtccgacaccgagacatataattacactaaattatgtgattttct 14332683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 27965953 - 27966039
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| |||| ||| ||||||| ||||| | |||| | |||||||||||| |  |||||||||||||||| ||||  |||||||||    
T  27965953 acactcctcggattaggcgtgtcccggtgtcaggcacgaggcgtgtctgacacgg--acatataattacactgaatttaatgattttct 27966039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 39130754 - 39130791
Alignment:
Q  97 cacgtgtcgtgtctgacaccgacacatataattacact 134  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  39130754 cacgtgttgtgtccgacaccgacacatataattacact 39130791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 52903314 - 52903269
Alignment:
Q  104 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  52903314 cgtgtccgacaccgacacatataattacactgaattatatgatttt 52903269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 7918212 - 7918252
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| ||||||||||||||||||| ||| |||||||||||    
T  7918212 gacactgacacatataattacactgaattatgtgattttct 7918252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 13436523 - 13436479
Alignment:
Q  104 cgtgtctgacaccgacacatataattacactgcattttgtgattt 148  Q
    |||||| |||||| |||||||||||||||||| ||| ||||||||    
T  13436523 cgtgtccgacaccaacacatataattacactgaattatgtgattt 13436479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 20157351 - 20157391
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||| ||||||||| ||| |||||||||||    
T  20157351 gacaccgacacatatgattacactgaattatgtgattttct 20157391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 25361944 - 25361904
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| ||||||||||||||||||| ||| |||||||||||    
T  25361944 gacactgacacatataattacactgaattatgtgattttct 25361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 28674874 - 28674818
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| ||||||||||||||||| ||| ||||||||| |||| ||| ||| |||||||    
T  28674874 gacaagtgtcgtgtctgacaccaacatatataattatactgaattatgtaattttct 28674818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 13845470 - 13845566
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| ||||||||||||||||| ||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13845470 aagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacacatataattacactgcattttgtgattttct 13845566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 35223052 - 35222930
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||||| | ||||||||||||| |||||||||| |||| |||||||||||||||||||||| || ||| |||||||||||       
T  35223052 aagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgattttctaaa 35222953  T
Q  155 nnnnttagttgtgtcggcgtgtc 177  Q
        |||||||||||||||||||    
T  35222952 aatgttagttgtgtcggcgtgtc 35222930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 2941672 - 2941576
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| |||| | |||||||||||  | ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  2941672 aagcacaaacatttcttggataaggcatatccccatgtcagacacgtgtcgtgtccgacaccgacacatataattacactgtattttgtgattttct 2941576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 204
Target Start/End: Complemental strand, 55401189 - 55401040
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | ||||||||||  ||| ||||||||| |       
T  55401189 aagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaa 55401090  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgt 204  Q
        |||||||||||||||| || || |||||||||| | ||||||||||    
T  55401089 attattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgt 55401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 214
Target Start/End: Original strand, 15999957 - 16000120
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgt------ctgacaccgacacatataattacactgcattttgtgattttc 150  Q
    ||||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||      | ||||||||||| | || |||||||| ||| ||| |||||     
T  15999957 gcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgtacgtgtccgacaccgacacttgtagttacactgaattatgttattttt 16000056  T
Q  151 tnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |       ||||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  16000057 ttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatcc 16000120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 40993288 - 40993374
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||| |||| ||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  40993288 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 28918109 - 28917965
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc--tgacaccgacacatataattacactgcattttgtgattttctnnnnnnntt 160  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||||   ||||||||||| | ||||||||||| ||| ||||||||| |       ||    
T  28918109 acactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 28918010  T
Q  161 agttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtg 205  Q
    || | |||||||||||| || |||||||||| | |||||||||||    
T  28918009 agctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtg 28917965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 8789493 - 8789591
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgt--cgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||||| |||| ||| ||||| | |||||||||| ||||  |||||| ||||||||||||||||||||||| | ||| |||||||||||    
T  8789493 aagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaattatgtgattttct 8789591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 177
Target Start/End: Complemental strand, 10955056 - 10954944
Alignment:
Q  65 actccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagtt 164  Q
    |||||| |||| ||| ||||||| ||||| ||||||||||||||| ||||||||||| | | ||||||||| ||| ||||||||| |       ||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagtt 10954957  T
Q  165 gtgtcggcgtgtc 177  Q
    |||||||||||||    
T  10954956 gtgtcggcgtgtc 10954944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 58 - 186
Target Start/End: Complemental strand, 18427060 - 18426932
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnn 157  Q
    |||| ||||||||  ||| ||||||||||| ||| | |||||||||||| || |||||||||| |||||||||||| | ||| ||||||||| |          
T  18427060 cacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacaccgaattatgtgattttttgaaatt 18426961  T
Q  158 nttagttgtgtcggcgtgtccgtatccgt 186  Q
     ||||| |||||||||||||||| |||||    
T  18426960 attagtggtgtcggcgtgtccgtgtccgt 18426932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 14028065 - 14028025
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14028065 gacaccgacacatataattacactgcattttgtgattttct 14028025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 7171607 - 7171457
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 162  Q
    ||||||||||||| ||| ||||| | ||||| ||||||||||||||| |||||| |||| | ||||||||| | ||| | ||||||| |         ||    
T  7171607 acactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattacaccgaattatatgatttt-tcaaattacaag 7171509  T
Q  163 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
     ||||||||| |||| ||||||||||||| | ||||||| ||||||||||||    
T  7171508 ctgtgtcggcatgtcagtatccgtgtcgtgtccggtgtctgtgtccgtatcc 7171457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 20503579 - 20503485
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| ||||||||||  |||||||||| | ||||||||||| ||| ||| |||||    
T  20503579 aagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcatttt 20503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 25093582 - 25093520
Alignment:
Q  89 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| |||| |||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  25093582 gtgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattgtgtgattttct 25093520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 10335335 - 10335390
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    ||||||||||||||||||| || |||||||||| | |||||||||||| |||||||    
T  10335335 ttagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatcc 10335390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 7928515 - 7928470
Alignment:
Q  104 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||    
T  7928515 cgtgtccgacaccgacacatataattacactgaattatgtgatttt 7928470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 11252050 - 11251996
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||| |||||||||||||||||  |||||||||||| ||| |||||||||||    
T  11252050 gacacgtgttgtgtctgacaccgacac--ataattacactgaattatgtgattttct 11251996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 25065031 - 25064966
Alignment:
Q  56 agcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||||||||||| ||||||   ||||||| ||||| ||||||||||||||| |||||| ||||    
T  25065031 agcacgaacactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacaccaacac 25064966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 147
Target Start/End: Complemental strand, 25775621 - 25775531
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatt 147  Q
    |||||||||||||||| |||| ||| ||||||  ||||| ||||||   |||||| ||||||||||| | ||||||||||| ||| |||||||    
T  25775621 aagcacgaacactcctcggattaggcgtgtcctggtgtcggacacga--cgtgtccgacaccgacacttgtaattacactgaattatgtgatt 25775531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 3631796 - 3631708
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtga 145  Q
    ||||| |||||||| |||  ||| ||||||  ||||| |||| |||||||||| ||||| | ||||||||||||||||| ||| |||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacactgaattatgtga 3631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 4990972 - 4991069
Alignment:
Q  115 ccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 212  Q
    ||||||| | ||||||||||| ||| ||| |||||||       ||||  ||||||| ||||| || |||||||||| ||||||||||||||||||||    
T  4990972 ccgacacttgtaattacactgaattatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgtccgtat 4991069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 25074909 - 25074841
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtg-tcgtgtctgacaccgacaca 122  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||| | | ||||| ||||||||||||    
T  25074909 aagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacaca 25074841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 46299764 - 46299804
Alignment:
Q  240 tgtacgagtttgccgcgtgaaataactactcatactggccc 280  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  46299764 tgtacgagtttgccgcgtgaaataaccactcatacttgccc 46299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 8842443 - 8842348
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttc 150  Q
    ||||||| |||||||| |||| ||| ||||| |  | ||  ||| ||||||||||||||||||||| ||||||||||||   ||| ||||||||||    
T  8842443 aagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgacatatataattacaccaaattatgtgattttc 8842348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 14338454 - 14338493
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca 120  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  14338454 gtgtcccggtgtccgatacgtgtcgtgtctgacaccgaca 14338493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 45451642 - 45451571
Alignment:
Q  80 tgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| | ||||| |||| |||||||||| ||||||||||||||| |||| |||| | | |||||||||||    
T  45451642 tgtgtctcggtgtcggacatgtgtcgtgtccgacaccgacacatattattatactgaagtatgtgattttct 45451571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 4987233 - 4987291
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    |||||||| |||| ||| ||||||| ||||| |||||||||||||||  ||||||||||    
T  4987233 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacac 4987291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 14209238 - 14209172
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||| ||||||| |||||| ||||  ||||  |||||||||||||| |||||||||||    
T  14209238 aagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacac 14209172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 16192665 - 16192727
Alignment:
Q  53 ctaagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    |||||||| |||||||||   || |||| |||||| ||||| |||||||||||||||||||||    
T  16192665 ctaagcacaaacactcctcatattaggtatgtcccggtgtcagacacgtgtcgtgtctgacac 16192727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 20691383 - 20691337
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttct 20691337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 41961584 - 41961650
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||| || |||| ||| ||||||| ||||| ||||||||||||||| || ||||||||    
T  41961584 aagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacac 41961650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 55
Target Start/End: Original strand, 46299717 - 46299747
Alignment:
Q  25 tgcatgtctgttctgcaacactgtgtagcta 55  Q
    |||||||||||||||||||||||||||||||    
T  46299717 tgcatgtctgttctgcaacactgtgtagcta 46299747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 750667 - 750723
Alignment:
Q  159 ttagttgtgtcggcgtgtcc-gtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||||||||||| ||||||  || |||||||||| | ||||||||||||||||||||    
T  750667 ttagttgtgtcgccgtgtcaagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 750723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 6780404 - 6780444
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    ||||||||| ||||| |||||| ||||||||||||||||||    
T  6780404 gacacgtgttgtgtccgacaccaacacatataattacactg 6780444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 14217017 - 14216957
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| ||||| || |||| ||||||||||| |||||  |||||||||||||| |||||    
T  14217017 aagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacac 14216957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 14223146 - 14223086
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| ||||| || |||| ||||||||||| |||||  |||||||||||||| |||||    
T  14223146 aagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacac 14223086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 27505365 - 27505305
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| |||||||| |||| |||  |||||| ||||| ||||||||||||||| |||||    
T  27505365 aagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacac 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 331
Target Start/End: Original strand, 46300108 - 46300136
Alignment:
Q  303 atcattaatgaatagttattgaattttaa 331  Q
    |||||||||||||||||||||||||||||    
T  46300108 atcattaatgaatagttattgaattttaa 46300136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 43737756 - 43737917
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||        
T  43737756 aagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccgacacatataattacactgtattttgtgattttcaaga 43737855  T
Q  155 nnnnttagttgtgtcggc--gtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
        |||| |||| ||||  ||||| || |||||||||| | ||||||||||||| ||||||    
T  43737856 aaatttagctgtgccggcgtgtgtcggtgtccgtgtcgtgtccggtgtccgtgtctgtatcc 43737917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 3951481 - 3951575
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| | ||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3951481 aagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacacatataagtacactgcattttgtgatttt 3951575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 34450966 - 34451032
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  34450966 aagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacac 34451032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 926733 - 926892
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||||| |  |||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||||| |   || ||||||||       
T  926733 aagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacactgaacaatgagattttctcaa 926832  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
        ||||  |||| |||||||| || |||||||||| | |||||||||||| |||||||    
T  926833 attattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatcc 926892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 3025665 - 3025569
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||||| |||| ||  ||||| | ||||| ||||||||||||||| ||||| ||||| ||||||||||||| ||| |||||||||||    
T  3025665 aagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatgtgattttct 3025569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 20679348 - 20679436
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| || ||||| ||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||| | | |||||||||||    
T  20679348 acactcctcggttaaggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttct 20679436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 14134810 - 14134717
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||||| | || ||| ||||||  ||| | |||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||    
T  14134810 cacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttct 14134717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 36450707 - 36450833
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 162  Q
    |||||||| |||| ||| ||||||  ||||| |||||| |||||||| |||||| |||| | ||||||||||| ||| ||||||||| |       ||||    
T  36450707 acactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaattattag 36450806  T
Q  163 ttgtgtcggcgtgtccgtatccgtgtc 189  Q
    ||||||||||||||| || ||||||||    
T  36450807 ttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 33405330 - 33405425
Alignment:
Q  56 agcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| |||||| |||||| ||  ||||||  ||||| |||| |||||||||| ||||||||||||||||||||||||  ||| |||| ||||||    
T  33405330 agcacggacactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttct 33405425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 34451038 - 34451077
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttc 150  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34451038 gacaccgacacatataattacactgcattttgtgattttc 34451077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 29510238 - 29510304
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||||| |||||||| |||||||||||    
T  29510238 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacac 29510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 31557102 - 31557016
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||| |||||||| ||| ||||||  ||||| |||| ||||||||||||||||||| || | ||||||||||| ||| |||||||||    
T  31557102 acacaccttggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtgatttt 31557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 2572057 - 2572167
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||| | ||||||||||  ||| ||||||||| |       |||| ||||||| |||||| ||||||||||||| | | ||||||||||||||    
T  2572057 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgtgtccgt 2572156  T
Q  211 atccattcttc 221  Q
    |||||| ||||    
T  2572157 atccatgcttc 2572167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 40332302 - 40332209
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||||| |||| ||| | ||||| ||||  |||||||||||||||  |||||||||| | ||||||||||| ||| |||||||||||    
T  40332302 cacggacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttct 40332209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 8293931 - 8293859
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    |||||||| |||| ||||||||||  ||||| || | ||||| ||| ||||||||||||||||||||||||||    
T  8293931 acactcctcggattaggtgtgtccaggtgtcagatatgtgtcatgtttgacaccgacacatataattacactg 8293859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 4786324 - 4786379
Alignment:
Q  96 acacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||| || ||||||||||||||||||||||||| ||| |||||||||||    
T  4786324 acacatgtcgtatccgacaccgacacatataattacactgaattatgtgattttct 4786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 24858014 - 24857957
Alignment:
Q  164 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 221  Q
    ||||||||||||||| | |||||||||| | |||||| ||||||||||||| ||||||    
T  24858014 tgtgtcggcgtgtccatgtccgtgtcgtgtccggtgttcgtgtccgtatccgttcttc 24857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 26902109 - 26902216
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----------tgacaccgacacatataattacactgcattttgt 143  Q
    ||||||| ||||||||  ||||||| ||||||||||| | |||||||||||||||            ||||||||||||||||||||||||| ||| |||    
T  26902109 aagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaattatgt 26902208  T
Q  144 gattttct 151  Q
    ||||||||    
T  26902209 gattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 31236570 - 31236656
Alignment:
Q  103 tcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtc 189  Q
    ||||||| | |||||||||||||||||||| || ||| |||||||||||       ||||  |||||||||||||||||||| ||||    
T  31236570 tcgtgtccgtcaccgacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtatccttgtc 31236656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 9414860 - 9414912
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatt 147  Q
    |||||||||||||||||||||| |||| ||||||| ||||| ||| |||||||    
T  9414860 gacacgtgtcgtgtctgacaccaacacttataattgcactgaattatgtgatt 9414912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 5813706 - 5813627
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 134  Q
    ||||||| ||||||||   || ||| ||||||| ||||| ||||||||||||||| ||||||||||| | || |||||||    
T  5813706 aagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacact 5813627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 22651986 - 22651931
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||| |||||||||||||| || |||||||||| | ||||||| ||||||||||||    
T  22651986 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatcc 22651931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 126295 - 126369
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 132  Q
    |||| |||||||| |||| ||  ||||||| || |  ||||||||||||||| ||||| ||||||||||||||||    
T  126295 cacggacactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattaca 126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 11927087 - 11927125
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  11927087 gacaccgacacatataattacactgaattatgtgatttt 11927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 13844591 - 13844637
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttct 13844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 22652101 - 22652035
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||||| |||| ||  ||||||| ||||| ||||| ||||||||| |||||||||||    
T  22652101 aagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacac 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 34897149 - 34897103
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| |||| |||||||||||||||||||| ||| |||||||||||    
T  34897149 gtgtccgacatcgacacatataattacactgaattatgtgattttct 34897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 8847314 - 8847277
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattt 148  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  8847314 gacaccgacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 12606825 - 12606870
Alignment:
Q  106 tgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttct 12606870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 37283797 - 37283851
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||  ||||||||||  |||||||||||| ||| |||||||||||    
T  37283797 gacacgtgtcgtgtcccacaccgacac--ataattacactgaattatgtgattttct 37283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 44462166 - 44462215
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataatta 130  Q
    ||||||| ||||| |||| || ||||||||||||||||||||||| ||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgatta 44462215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 44469699 - 44469748
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataatta 130  Q
    ||||||| ||||| |||| || ||||||||||||||||||||||| ||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgatta 44469748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 24196646 - 24196698
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgta 211  Q
    ||||||||||||||||||| || ||||| |||| ||||||||| || ||||||    
T  24196646 ttagttgtgtcggcgtgtcggtgtccgtatcgtattcggtgtctgtatccgta 24196698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 31580072 - 31580168
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| |||||| ||| |||| ||||||||  | |||||  ||| |||||| ||| |||| |||||| ||||||||||||  ||| |||||||||||    
T  31580072 aagcatgaacacccctcggattaggtgtgtttcggtgtcgaacatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttct 31580168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 24009409 - 24009314
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  24009409 aagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacata-atttacactgcattttgtgattttct 24009314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 20242680 - 20242808
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 162  Q
    |||||| | |||||||| |||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||       ||||    
T  20242680 acactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgattttctaaaaaaattag 20242779  T
Q  163 ttgtgtcggcgtgtccgtatccgtgtcgt 191  Q
    ||||||||||||||| || ||| ||||||    
T  20242780 ttgtgtcggcgtgtcagtgtccatgtcgt 20242808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 18840958 - 18841037
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 134  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||||||| | ||||||||||    
T  18840958 aagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacact 18841037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 2438664 - 2438758
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 2438758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 180
Target Start/End: Original strand, 36096309 - 36096445
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac-----------atataattacactgcattttgt 143  Q
    ||||||| |||||| |||| ||||| ||||||||||||| ||||||||||||||| |||| ||||||           ||||||||||||||||||||||    
T  36096309 aagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcattttgt 36096408  T
Q  144 gattttctnnnnnnnttagttgtgtcggcgtgtccgt 180  Q
    ||||||||       |||| |||||||||||||||||    
T  36096409 gattttctaaaaaatttagctgtgtcggcgtgtccgt 36096445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 28596583 - 28596503
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    ||||||| |||||||| |||| ||| ||||||  ||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  28596583 aagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacactg 28596503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 15972987 - 15972851
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| ||| || | |||| ||||||||||| | ||| ||||||||||||||| ||||||||||| | ||||||||||| ||| ||| ||||| |       
T  15972987 aagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgtgtaattttttcaa 15972888  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 191  Q
        ||| ||||||||||||||| || ||||||||||    
T  15972887 attattaattgtgtcggcgtgtcagtgtccgtgtcgt 15972851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 12224337 - 12224243
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| |||||||||||||| ||| ||||||| ||||| ||||||| ||||||| ||||||||||| | |||||||| || ||| || ||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattggattatgggatttt 12224243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 34784983 - 34785085
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||||||||||||||||  ||| |||||||||||       ||||||||||||| ||||| || |||||||||| |  || ||||||||||||    
T  34784983 gacaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgtcgtgtctggggtccgtgtccgt 34785082  T
Q  211 atc 213  Q
    |||    
T  34785083 atc 34785085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 34993927 - 34994004
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 132  Q
    |||||||||||||||||| || ||| ||||||| ||||| ||||| ||||||||  ||||| ||||||||||||||||    
T  34993927 aagcacgaacactccttgaattaggcgtgtcccagtgtcggacacatgtcgtgttcgacactgacacatataattaca 34994004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 40361739 - 40361865
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgtttt 194  Q
    |||||||||||||||||||||| ||| |||||||||||||  ||| ||| ||||| |       ||| | |||||   ||||||||||| ||||||| ||    
T  40361739 gacacgtgtcgtgtctgacaccaacagatataattacactaaattatgtaattttttcaaattattaatagtgtcatagtgtccgtatctgtgtcgtgtt 40361838  T
Q  195 cggtgtccgtgtccgtatccattcttc 221  Q
    |||| ||||||||||||||||| ||||    
T  40361839 cggtatccgtgtccgtatccatgcttc 40361865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 5367292 - 5367213
Alignment:
Q  69 cttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattt 148  Q
    ||||||| ||| ||||||| | ||| || | |||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  5367292 cttggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgattt 5367213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 149
Target Start/End: Complemental strand, 5040845 - 5040754
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||| ||||||||||||  ||| ||||||| | ||| ||||| ||||||||| ||||||||||| | |||||||| || ||| |||||||||    
T  5040845 cacggacactccttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 5040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 37411198 - 37411285
Alignment:
Q  64 cactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||  ||| ||||||| ||||| |||||| |||||||  |||| ||||||||||||| |||||| ||| |||||||||||    
T  37411198 cactcctcggactaggcgtgtcccagtgtcggacacgcgtcgtgttcgacatcgacacatataatcacactgaattatgtgattttct 37411285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 18054804 - 18054907
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct-nnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccg 209  Q
    |||||| |||||||||||||||||||| |||||||||||||        |||| ||||||| |||||| || ||| |||||| | ||||||||||||| |    
T  18054804 gacaccaacacatataattacactgcagtttgtgattttctaaaaaaaattagctgtgtcgacgtgtcggtgtccctgtcgtgtccggtgtccgtgtctg 18054903  T
Q  210 tatc 213  Q
    ||||    
T  18054904 tatc 18054907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 29176442 - 29176528
Alignment:
Q  59 acgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtga 145  Q
    ||||||||| ||||||| ||||||||| | ||||| |||| ||| ||||||  ||||| |||| ||||||||||||| ||| |||||    
T  29176442 acgaacacttcttggattaggtgtgtctcagtgtcggacatgtgccgtgtccaacaccaacacttataattacactgaattatgtga 29176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 26769636 - 26769571
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca 120  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| || |||||||    
T  26769636 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgaca 26769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 41843552 - 41843422
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctg-----acaccgacacatataattacactgcattttgtgattttctnnnnnn 157  Q
    |||||||| |||||| | ||||||||||||| ||||||||||| ||| |     ||||||||||||||||||| || | ||| |||||||| ||          
T  41843552 acactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaa 41843453  T
Q  158 nttagttgtgtcggcgtgtccgtatccgtgt 188  Q
     |||||| |||||||||||| || |||||||    
T  41843452 tttagttttgtcggcgtgtcagtgtccgtgt 41843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 21091837 - 21091757
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    ||||||| |||||| | |||  ||||||||||| |||||||||| ||| | |||||||||| ||||| | |||||||||||    
T  21091837 aagcacggacactcttcggaataggtgtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactg 21091757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 18276594 - 18276539
Alignment:
Q  96 acacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| || ||||||||||||||| |||||||||||| |||  ||||||||||    
T  18276594 acacgtgtggtatctgacaccgacacacataattacactgaattaagtgattttct 18276539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 149
Target Start/End: Complemental strand, 31808176 - 31808097
Alignment:
Q  70 ttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| ||||||||||  |||||  ||| |||||||||   |||| ||||||||||||||||||| ||| |||||||||    
T  31808176 ttggattaggtgtgtccaggtgtcgaacatgtgtcgtgttcaacactgacacatataattacactgaattatgtgatttt 31808097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 30717464 - 30717530
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||||||||||| ||| || |||| |||||  |||||||||||||| |||| ||||||    
T  30717464 aagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacac 30717530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 35056993 - 35056927
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||||||  ||| ||| ||||  ||||||| ||||||||||||||| |||||||||||    
T  35056993 aagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacac 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 37419868 - 37419802
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||  ||||||| |||||||||||    
T  37419868 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacac 37419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 37559091 - 37558997
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| | | |||| || ||||| ||||||||||  ||| ||||||||||| | |||||||| || ||| |||||||||    
T  37559091 aagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtgatttt 37558997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 28678002 - 28677929
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgac-----acatataattacactgcattttgtgatttt 149  Q
    ||||||| ||||| ||||| |||||||| ||||||||||     |||||||||||||||| ||| |||||||||    
T  28678002 gtgtccctgtgtcggacacttgtcgtgtttgacaccgacaccgaacatataattacactgaattatgtgatttt 28677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 34691799 - 34691844
Alignment:
Q  104 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  34691799 cgtgtccgacaccgacacatataattacactgaattatatgatttt 34691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 34714211 - 34714256
Alignment:
Q  104 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  34714211 cgtgtccgacaccgacacatataattacactgaattatatgatttt 34714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 38355887 - 38355928
Alignment:
Q  110 tgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||| |||||| ||| |||||||||||    
T  38355887 tgacaccgacacatataatcacactgaattatgtgattttct 38355928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 18889592 - 18889632
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||| ||||||||| ||| |||||||||||    
T  18889592 gacaccgacacatatgattacactgaattatgtgattttct 18889632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 30404829 - 30404889
Alignment:
Q  89 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||| |||| |||||||||| ||| ||||||| | ||||||||||| ||| |||||||||    
T  30404829 gtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaattatgtgatttt 30404889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 44860378 - 44860338
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| ||| || ||||||||    
T  44860378 gacaccgacacatataattacactgaattatgcgattttct 44860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 18367961 - 18367792
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac-----------atataattacactgcattttgt 143  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||           ||||||||||||||||||||||    
T  18367961 aagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgt 18367862  T
Q  144 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    ||||||||       |||| ||||||||||||| ||| ||| |||||| | ||||||||||||||||||||    
T  18367861 gattttctaaaaaaattagctgtgtcggcgtgt-cgtgtccatgtcgtgtccggtgtccgtgtccgtatcc 18367792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 34595248 - 34595098
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||| | ||||||||||| ||| ||||||||| |       
T  34595248 aagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa 34595149  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtg 205  Q
        |||||||||||||||||||  | |||||||||| | |||||||||||    
T  34595148 attattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 8776913 - 8777077
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtg-----tcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||||||||| | ||||| ||||||||     ||||||| |||||| |||| | ||||||||||| |||||||||||||    
T  8776913 aagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtcgtgtccgacaccaacacttgtaattacactgaattttgtgatttt 8777012  T
Q  150 ctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
     |       ||||||||||||||||||| || |||||||||| | || |||||||||||||||||    
T  8777013 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatcc 8777077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 16488524 - 16488690
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----------tgacaccgacacatataattacactgcattttgt 143  Q
    ||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||            |||||||||||||||||||||||||||||||||    
T  16488524 aagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgt 16488623  T
Q  144 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccat 216  Q
    ||||||||       |||| ||||||||||||      ||| |||||||| |||||||||||||||| |||||    
T  16488624 gattttctaaaaaaattagctgtgtcggcgtg------tccatgtcgtttccggtgtccgtgtccgtgtccat 16488690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 9658994 - 9658857
Alignment:
Q  55 aagcacgaacactccttgga-taaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnn 153  Q
    ||||||| |||||||||||| | ||| |||| || ||||| |||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||      
T  9658994 aagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttctta 9658895  T
Q  154 nnnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 191  Q
         ||||  ||||||||||||| || ||||||||||    
T  9658894 aattattagcggtgtcggcgtgtcagtgtccgtgtcgt 9658857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 13789268 - 13789174
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||||||||||||| |||||| || ||||| |||| |||||||||| |||| ||||  || |||||||||||||||||||||| |||||||    
T  13789268 aagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgacattgatacatataattacactgcattttatgatttt 13789174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 13797887 - 13797793
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||||||||||||| |||||| || ||||| |||| |||||||||| |||| ||||  || |||||||||||||||||||||| |||||||    
T  13797887 aagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgacattgatacatataattacactgcattttatgatttt 13797793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 28152212 - 28152118
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||||||||||| |||| |||  |||||| ||||| ||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  28152212 aagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 28152118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 16766755 - 16766645
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||| | ||||||||||| ||| ||||||||| |       |||| |||||||||||||| || ||| |||||| | ||||||||||||||||    
T  16766755 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgt 16766656  T
Q  211 atccattcttc 221  Q
    |||||| ||||    
T  16766655 atccatgcttc 16766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 12696435 - 12696383
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  12696435 acactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 16833414 - 16833286
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 162  Q
    |||||||| ||||  |||||||||  ||||| ||| |||||||||||| |||||||||| | ||||||||||| | | ||||||||| |       ||||    
T  16833414 acactcctcggattcggtgtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaagtatgtgattttttcaaattattag 16833315  T
Q  163 ttgtgtcggcgtgtccgtatccgtgtcgt 191  Q
    ||||||||||||||| || || |||||||    
T  16833314 ttgtgtcggcgtgtcagtgtctgtgtcgt 16833286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 32978844 - 32978923
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 134  Q
    ||||||| ||||||||||||| ||  ||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacact 32978923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 210
Target Start/End: Original strand, 853812 - 853959
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 162  Q
    |||||| |||||| ||| ||||| |  |||| ||||| |||||| || ||||||||||| | ||||| ||||  ||| ||||||||| |       ||||    
T  853812 acactcattggattaggcgtgtctctatgtcggacacatgtcgtatccgacaccgacacttgtaattgcacttaattatgtgattttttcaaattattag 853911  T
Q  163 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||||||| | ||||||||||| | |||||||||| |||||    
T  853912 ttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgt 853959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 33001234 - 33001328
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||| ||||||| |||||| ||| || |  | ||||| ||||||||||||||| |||||||||||||||||||||| |  ||| |||||||||    
T  33001234 aagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgatttt 33001328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 9027236 - 9027134
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||||||||||||||| | ||| ||||||| |||       ||||  ||||||||||||| || |||||||||| | ||| ||||||||||||    
T  9027236 gacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtccgt 9027137  T
Q  211 atc 213  Q
    |||    
T  9027136 atc 9027134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 7740712 - 7740660
Alignment:
Q  98 acgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttc 150  Q
    |||||||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  7740712 acgtgtcgtgtccgacactgacacatataattacactcaattttgtgattttc 7740660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 7938180 - 7938071
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgt 204  Q
    ||||| ||||||||||| ||||||||||||  ||| | ||||||| |       |||| |||||||||||||| || ||| |||||| | ||||||||||    
T  7938180 gtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T
Q  205 gtccgtatcc 214  Q
    ||||||||||    
T  7938080 gtccgtatcc 7938071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 13360318 - 13360413
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||| | |||| ||| ||||| | ||||| ||||  ||| |||||||||||||| |||||||||||||||| ||| |||||||||||    
T  13360318 aagcacggacactcttcggattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaattatgtgattttct 13360413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 7996327 - 7996419
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| | ||||||||||| ||| ||||||||||||  |||||||||||     ||||||||| ||||||||||||||| ||| | |||||||||    
T  7996327 aagcacggagactccttggattaggcgtgtccccgtgttagacacgtgtcg----cgacaccgacgcatataattacactgaattatatgattttct 7996419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 8022474 - 8022382
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| | ||||||||||| ||| ||||||||||||  |||||||||||     ||||||||| ||||||||||||||| ||| | |||||||||    
T  8022474 aagcacggagactccttggattaggcgtgtccccgtgttagacacgtgtcg----cgacaccgacgcatataattacactgaattatatgattttct 8022382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 17327595 - 17327719
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----tgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||||||||||||||      ||||| |||||||||| |||||||  ||| |||||||||    
T  17327595 aagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacactaaattatgtgatttt 17327694  T
Q  150 ctnnnnnnnttagttgtgtcggcgt 174  Q
    ||       ||||||||||||||||    
T  17327695 ctcaaaatcttagttgtgtcggcgt 17327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 19040421 - 19040370
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  19040421 gtgtcgtgtccgacacagacacatataattacactgaattatgtgattttct 19040370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 7265588 - 7265634
Alignment:
Q  105 gtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttct 7265634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 7378047 - 7377997
Alignment:
Q  101 tgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||| |||||||||||||||||||||| || ||| |||||||||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttct 7377997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 19044523 - 19044432
Alignment:
Q  110 tgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtc 201  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||       ||||| ||||||||||||| || ||| |||||| |||||||||    
T  19044523 tgacaccgacacatataataacactgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtccatgtcgtattcggtgtc 19044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 28715409 - 28715315
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| ||||| || | || ||| ||||||| |||||  |||||||||||||| ||||||||||| | ||||||||||| ||| ||| |||||    
T  28715409 aagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcatttt 28715315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 30851674 - 30851637
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattaca 132  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30851674 gacacgtgtcgtgtccgacaccgacacatataattaca 30851637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 5626686 - 5626763
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 177  Q
    |||||||||| |||||||||||||||| |||||||| | |  ||||||||||       |||||||||||||||||||    
T  5626686 gtgtcgtgtccgacaccgacacatatatttacactgaactaagtgattttctaaaaaaattagttgtgtcggcgtgtc 5626763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 9025495 - 9025535
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  9025495 gacaccgacacatataattacactgaattatgtgattttct 9025535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 24645561 - 24645501
Alignment:
Q  89 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||| ||||||||||||||||||||||||||| | ||| || |||| ||| |||||||||    
T  24645561 gtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttt 24645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 7027300 - 7027262
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  7027300 gacaccgacacatataattacactgaattatgtgatttt 7027262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 8365453 - 8365519
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| | |||||| |||| ||| ||||||| ||||| ||||||||||||||| || ||||||||    
T  8365453 aagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacac 8365519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 10339059 - 10339125
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||||||  ||| ||| ||||||| ||||| |||| |||||||||| |||||||||||    
T  10339059 aagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 10339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 31385044 - 31384990
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc 109  Q
    ||||||| ||||||||||||| ||| ||||||| ||||  |||||||||||||||    
T  31385044 aagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtc 31384990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 426568 - 426625
Alignment:
Q  164 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 221  Q
    |||||||||||||| || |||||||||| | |||| |||||||| |||||||| ||||    
T  426568 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttc 426625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 31579212 - 31579266
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||||||| |||||||||||  |||||||||||| ||| |||||||||||    
T  31579212 gacatgtgtcgtgtccgacaccgacac--ataattacactgaattatgtgattttct 31579266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 9617492 - 9617452
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||| || ||| |||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttct 9617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 9629441 - 9629401
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||| || ||| |||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttct 9629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 26562747 - 26562707
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||||||||||||||||| ||| |||||||||||    
T  26562747 gacatcgacacatataattacactgaattatgtgattttct 26562707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 407 - 566
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||||| |||||||| ||||||||||| | ||||||||||| ||||||||||||| |       
T  407 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa 506  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
        ||||  |||||||||| || || |||||| ||| ||||||||||||||||||||||    
T  507 attattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgtgtccgtatcc 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 55 - 214
Target Start/End: Complemental strand, 6401623 - 6401453
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac-----------cgacacatataattacactgcattttgt 143  Q
    ||||||| ||||||||||||||||| || |||||||||| ||||||||||||||| |||||           |||||||||||||||||||| |||||||    
T  6401623 aagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtattttgt 6401524  T
Q  144 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    ||||||||       ||||||||||||||||||| || |||||||||  | ||||||||||||| ||||||    
T  6401523 gattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatcc 6401453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 30098983 - 30099061
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacac 133  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  30098983 aagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacacatataattacac 30099061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 21814386 - 21814220
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccg-----------acacatataattacactgcattttgt 143  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||| |||||||           ||||||||||||||||||||||||||    
T  21814386 aagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgt 21814287  T
Q  144 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccat 216  Q
    ||||||||       |||| ||||||||||||      ||| |||||||| |||||||||||||||| |||||    
T  21814286 gattttctaaaaaaattagctgtgtcggcgtg------tccatgtcgtttccggtgtccgtgtccgtgtccat 21814220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 21191001 - 21191158
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||| ||||||| | ||| ||||||||| ||||| ||||||||||| | ||||||||||| ||| ||||||||| |       
T  21191001 aagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa 21191100  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 212  Q
        |||| ||||||||| |||| || |||||||||| | ||||||| ||||||||||    
T  21191101 attattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtat 21191158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 30502333 - 30502429
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||| ||||||||| |||  |||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  30502333 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttct 30502429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 30542676 - 30542772
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||| ||||||||| |||  |||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  30542676 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttct 30542772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 21576690 - 21576784
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| |||| |||||| | ||||||||||| ||| |||||||||    
T  21576690 aagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtgatttt 21576784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 42029864 - 42029744
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnn 156  Q
    ||||| |||||||| |||||||| |||||  |||| | |||| |||||||||| |||||||| ||||||||||||| || ||| |||||||||||         
T  42029864 gcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacaccgatacatataattacattgaattatgtgattttctaaatt 42029765  T
Q  157 nnttagttgtgtcggcgtgtc 177  Q
      ||| |||||||||||||||    
T  42029764 ttttaattgtgtcggcgtgtc 42029744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 26312884 - 26312803
Alignment:
Q  54 taagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    |||||||  |||||||| |||| ||||||||||  ||||| ||||||| ||||||| |||||||| ||||||||||||||||    
T  26312884 taagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacactg 26312803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 43564995 - 43564901
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| ||||| || |||| ||| ||||||| | ||| ||||| ||||||||| ||||||||||| ||||||||||||  ||| |||||||||    
T  43564995 aagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 43564901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 18421826 - 18421882
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||||||| ||| ||||||||||||||||||||| ||| |||||||||||    
T  18421826 gacatgtgtcgtgtccgacgccgacacatataattacactggattatgtgattttct 18421882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 42893440 - 42893380
Alignment:
Q  89 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||| ||||||||| ||||||||||||||||| | ||||||||||| ||| |||||||||    
T  42893440 gtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactggattatgtgatttt 42893380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 214
Target Start/End: Complemental strand, 6770615 - 6770498
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgtttt 194  Q
    |||| |||||||||| ||||| ||||||||  | ||||||| ||| |||||||||||       ||||||||||| | ||||| || |||||||| | ||    
T  6770615 gacatgtgtcgtgtccgacactgacacata--agtacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgtt 6770518  T
Q  195 cggtgtccgtgtccgtatcc 214  Q
    |||||||||| |||||||||    
T  6770517 cggtgtccgtatccgtatcc 6770498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 28588664 - 28588715
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||| ||||||||||| ||||||||||||| ||| |||||||||||    
T  28588664 gtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttct 28588715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 210
Target Start/End: Original strand, 37328845 - 37328944
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||||| ||||||||||| |||||||||||||         || | |||||||| || || || |||||||||| ||||||||||||||||||    
T  37328845 gacaccgacacatgtaattacactgaattttgtgatttttacaaattatttgctgtgtcggtgtatcagtgtccgtgtcgtgttcggtgtccgtgtccgt 37328944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 39268543 - 39268613
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatat 125  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||| |||||||||  ||||||||||||||    
T  39268543 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacacatat 39268613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 42469225 - 42469180
Alignment:
Q  165 gtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||    
T  42469225 gtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgt 42469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 3966561 - 3966521
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttct 3966521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 21194068 - 21194164
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||||| |||| ||| ||| ||| ||||| |||| ||||||||||  ||||| | || ||||||||||||| ||  |||||||||||    
T  21194068 aagcacggacactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgtccaacaccaatacctataattacactgaatgatgtgattttct 21194164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 21522873 - 21522809
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||| |||||| |||||| ||| ||||||| ||| | ||||||||||||||| |||||||||||    
T  21522873 gcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacac 21522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 21533439 - 21533375
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||| |||||| |||||| ||| ||||||| ||| | ||||||||||||||| |||||||||||    
T  21533439 gcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacac 21533375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 21542153 - 21542089
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||| ||| |||||||||  || ||||||| ||||| ||||||||||||||| |||||||||||    
T  21542153 gcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 21542089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 27932349 - 27932253
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| ||||||||| | || ||| ||||||  ||||||||||||||||||||| |||||| | |  | ||||||||||| ||| ||| |||||||    
T  27932349 aagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttct 27932253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 15382487 - 15382432
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||| ||||||||||||||  | |||||||||| | ||||||||||||||||||||    
T  15382487 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatcc 15382432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 21522760 - 21522705
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||| |||||||||||||| || |||||||||| | ||||| ||||||||||||||    
T  21522760 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatcc 21522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 21533326 - 21533271
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||| |||||||||||||| || |||||||||| | ||||| ||||||||||||||    
T  21533326 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatcc 21533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 41995481 - 41995426
Alignment:
Q  159 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    ||||||||||||||||||| || || ||||||| | | ||||||||||||||||||    
T  41995481 ttagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtgtccgtatcc 41995426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 23012380 - 23012430
Alignment:
Q  82 tgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 132  Q
    |||||| ||||| |||| ||||||||||  |||||||||||||||||||||    
T  23012380 tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacatataattaca 23012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 15884057 - 15884008
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 15884008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 32630688 - 32630757
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 132  Q
    |||||||| | || ||||||||| |  |||| |||||||||||| || ||||| ||||||||||||||||    
T  32630688 acactcctcgaattaggtgtgtctcaatgtcggacacgtgtcgtatccgacactgacacatataattaca 32630757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 39758327 - 39758290
Alignment:
Q  114 accgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattttct 39758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 6471890 - 6471930
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  6471890 gacacccacacatataattacactgaattatgtgattttct 6471930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 17123161 - 17123066
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| || |||||||  ||||||||| ||||||||  |||  ||| |||||||||||    
T  17123161 aagcacggacactcctcggattaggcgtgtccc-gtgtcggacatgtttcgtgtccaacaccgacatatataattgtacttgattatgtgattttct 17123066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 30098451 - 30098391
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| ||| |||| |||| ||||||||||  ||||| ||||||||||||||| |||||    
T  30098451 aagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 41091258 - 41091298
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||| |||||||||||||||||||| ||| |||||||||||    
T  41091258 gacatcgacacatataattacactgaattatgtgattttct 41091298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 5414106 - 5414264
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac-----------atataattacactgcattttgt 143  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||           ||||||||||||||||||||||    
T  5414106 aagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcattttgt 5414205  T
Q  144 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtcc 202  Q
    ||||||||       |||| ||||||||||||||||| |||||||||| | ||||||||    
T  5414206 gattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgtcgtgtccggtgtcc 5414264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 23292931 - 23293089
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| ||||||||||| | |||||| |||| ||| ||||||||| |       
T  23292931 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaa 23293030  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 213  Q
        |||| ||||||||||||||  | |||||||||| | |||||||||||||||||||    
T  23293031 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatc 23293089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 49431132 - 49431046
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||| |||||||| ||||||| ||||  ||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttt 49431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 12895219 - 12895377
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    |||||||||||||||| |||| ||| |||||||  |||| || || ||||||||| ||||||||||| |||||||||||   ||| ||||||||| |       
T  12895219 aagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatgtgattttttcaa 12895318  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 213  Q
        ||| |||||||||||||||  | | |||||||| | |||||||||| ||||||||    
T  12895319 attattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgtatccgtatc 12895377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 36635444 - 36635272
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac-----cga-cacatataattacactgcattttgtgattt 148  Q
    ||||||| |||||| | |||| ||| ||||||| ||||| ||| |||||||||||||||||     ||| ||||||||||||||||| ||| ||||||||    
T  36635444 aagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacgaacacatataattacactgaattatgtgattt 36635345  T
Q  149 tctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 221  Q
    |||       ||||| |||| |||||||| || |||| ||||| | ||||||| |||||| ||||||| ||||    
T  36635344 tctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtctgtgtccttatccatgcttc 36635272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 30982812 - 30982878
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||| |||||| ||| ||||||| ||||| |||||||||||||||||||||||||||    
T  30982812 aagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 35157970 - 35158089
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgtttt 194  Q
    |||| |||||||||| ||||||||||| ||||||||||||  ||| |||||||||         ||||||| ||||||||||| || ||||||| || |     
T  35157970 gacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtc 35158069  T
Q  195 cggtgtccgtgtccgtatcc 214  Q
    ||||||||||||||||||||    
T  35158070 cggtgtccgtgtccgtatcc 35158089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 9996932 - 9996858
Alignment:
Q  77 aggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| || ||||| |||||||||  ||||||||||||| ||||||||||| |||| ||| |||||||||||    
T  9996932 aggtgtgttccagtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttct 9996858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 19482793 - 19482739
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc 109  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||    
T  19482793 aagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtc 19482739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 34306749 - 34306843
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||||| ||||  ||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | |||||||||| |||| | |||||||    
T  34306749 aagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactacattatctgatttt 34306843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 54580008 - 54580062
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  54580008 gacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 19097859 - 19097935
Alignment:
Q  75 taaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| ||||||||||||| |||||||||| |||  |||||||||| ||||||||| |||| |||  ||||||||||    
T  19097859 taaggcgtgtccccgtgtcagacacgtgtcatgttcgacaccgacaaatataattatactgaattacgtgattttct 19097935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 35161150 - 35161054
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||  | |||| |||||||| || ||||| ||||||||||||||| ||| | || || ||||||||||||| ||| |||||||||||    
T  35161150 aagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacactgaattatgtgattttct 35161054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 848073 - 848015
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacacc 116  Q
    |||| ||||||||||||| ||||||||||| |||| |||||||| ||||||| ||||||    
T  848073 cacggacactccttggattaggtgtgtcccggtgttcgacacgtttcgtgtccgacacc 848015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 8402721 - 8402783
Alignment:
Q  89 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| |||| |||||||||||||||| || |||||||||||||||| ||| | |||||||||    
T  8402721 gtgtcggacaagtgtcgtgtctgacactgagacatataattacactgaattatatgattttct 8402783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Original strand, 8423689 - 8423759
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| ||||| ||||  ||||||||| ||||||||||  ||||||||||||| ||| |||||||||||    
T  8423689 gtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttct 8423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 12324034 - 12323968
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| |||||||| ||||||||||||| |||||| |  ||||||||| |||| |||||||||||    
T  12324034 aagcacggacactcctcggataaggtgtgttcccgtgccacacacgtgtcatgtccgacaccgacac 12323968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 12797283 - 12797377
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||||| |||| |||| ||   |||||| ||||| |||| || ||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  12797283 aagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 12797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 20950420 - 20950458
Alignment:
Q  103 tcgtgtctgacaccgacacatataattacactgcatttt 141  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  20950420 tcgtgtctgacaccgacacatataattacactgaatttt 20950458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 22234824 - 22234890
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||||||||| || |||| || |||||||  ||||| ||||||||||||||| |||||||||||    
T  22234824 aagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacac 22234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 28964201 - 28964287
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||| |||| ||| ||||||| ||||| || | |||||||||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  28964201 acactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatgtgatttt 28964287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 24613635 - 24613700
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca 120  Q
    ||||||| |||||||| |||| ||  ||||||  ||||| ||||||||||||||||||||||||||    
T  24613635 aagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgaca 24613700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 40179626 - 40179675
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||||| ||||||||| ||||||||||||||| ||| |||||||||    
T  40179626 gtgtcgtgtccgacaccgacgcatataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 3947706 - 3947766
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| |||||||| |||| ||||||||||  ||||| ||||||||||||||| |||||    
T  3947706 aagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacac 3947766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 29205532 - 29205464
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| ||||| |||| ||||||||||  |||||||||| | ||||||||||| ||| |||||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgatttt 29205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 2361920 - 2361999
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 134  Q
    ||||||| |||||| |  ||| ||||||||| | ||||| |||||| |||||||| ||||||||||| | ||||||||||    
T  2361920 aagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacacttttaattacact 2361999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 13783339 - 13783236
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||| ||||||||||||||||| |||||||||| ||||       ||||  ||||||| ||||| || |||||||| |||  | |||||||||| ||    
T  13783339 gacaccggcacatataattacactgaattttgtgatcttctcaaataattagcggtgtcggtgtgtcagtgtccgtgtcatttgagatgtccgtgtctgt 13783240  T
Q  211 atcc 214  Q
    ||||    
T  13783239 atcc 13783236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 29205582 - 29205528
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc 109  Q
    |||||||||||||||| |||| ||| ||||||| ||||| |||| ||||||||||    
T  29205582 aagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgtc 29205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 36509077 - 36509131
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||||||| ||| ||| ||||||||||||||||||||  ||| |||||||||    
T  36509077 gacacgtgtcgcgtccgacgccgacacatataattacacttgattatgtgatttt 36509131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 44362760 - 44362714
Alignment:
Q  75 taaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    |||||||||||||  ||||||| ||||||||||||||||||| ||||    
T  44362760 taaggtgtgtcccgatgtccgatacgtgtcgtgtctgacaccaacac 44362714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 715550 - 715646
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct--gacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||    |||||| |||| | ||||||||||| ||| |||||||||    
T  715550 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgatttt 715646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 752876 - 752972
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct--gacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||    |||||| |||| | ||||||||||| ||| |||||||||    
T  752876 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgatttt 752972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 5775358 - 5775399
Alignment:
Q  110 tgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||||||  ||| |||||||||||    
T  5775358 tgacaccgacacatataattacacttaattatgtgattttct 5775399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 30103310 - 30103397
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| |||| || |||||||   |||| ||||  |||||||| |||||||||||||||| ||||||||  ||| |||||||||||    
T  30103310 acactcctcggattagatgtgtcctgatgtcagacatatgtcgtgtttgacaccgacacatatgattacact-aattatgtgattttct 30103397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 40613504 - 40613468
Alignment:
Q  115 ccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattttct 40613468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 9956 - 9853
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||||||||||||||||||||||| |||||||||       |||| |||||||||||||| || ||| |||||| | ||||||||||||||||    
T  9956 gacaccgacacatataattacactgcattttatgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtgtccgt 9857  T
Q  211 atcc 214  Q
    ||||    
T  9856 atcc 9853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 18212986 - 18213137
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct-nnnnnnntta 161  Q
    |||||||| |||||||| ||||||||||||| || | | |||||||| ||||||||||||||||||||||||  ||| |||||||||||        |||    
T  18212986 acactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccgacaccgacacatataattacactaaattatgtgattttctaaaaaaaatta 18213085  T
Q  162 gttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 213  Q
    ||||||||||||| || || |||||||||| |  ||||| ||||| ||||||    
T  18213086 gttgtgtcggcgtatcagtgtccgtgtcgtgtctggtgttcgtgttcgtatc 18213137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 32287408 - 32287504
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| |||||||| |||| ||||||||||| ||||| ||||| |||| |||| |||||||||||||||| || ||||| ||| |||||||||||    
T  32287408 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacacatatacttgcactgaattatgtgattttct 32287504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 39138541 - 39138462
Alignment:
Q  72 ggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| ||||||||||||  |||| || ||||||| |||||||||| |||||||||||||| ||| |||||||||||    
T  39138541 ggataaggcgtgtccccgtgttagacatgtatcgtgtccgacaccgacatatataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 598322 - 598245
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 132  Q
    ||||||| ||||| || |||| ||| ||||||| ||||| ||||||||||||||||||||||||||| || |||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattaca 598245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 27093366 - 27093454
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| | |||| ||||||||||  ||||| ||||| |||||||||| |||||||| ||||||||||||||  ||| |||||||||||    
T  27093366 acactcatcggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttct 27093454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 27184935 - 27184847
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| | |||| ||||||||||  ||||| ||||| |||||||||| |||||||| ||||||||||||||  ||| |||||||||||    
T  27184935 acactcatcggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttct 27184847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 33994323 - 33994236
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtga 145  Q
    |||||||||||||||||| ||| ||||| | ||||  |||| |||||||||||||||||||||| | ||||| ||||| ||| |||||    
T  33994323 cacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaattgcactgaattatgtga 33994236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 5835335 - 5835265
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| || || ||||| |||| |||||||||||||||||||||||||||||| ||| ||| |||||||    
T  5835335 gtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattacactgaattatgttattttct 5835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 15680923 - 15680829
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| | || ||  ||||| | ||||| ||||||||||||||| ||||||||||| ||||||||||||  ||| |||||||||    
T  15680923 aagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 15680829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 640182 - 640134
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattt 148  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  640182 gtgtcgtatctgacaccgacacatataattacactgaattatgtgattt 640134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 20549905 - 20549809
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||  ||||||| |||| ||| ||||| |  |||| |||| |||| ||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  20549905 aagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttct 20549809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 21880266 - 21880170
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||| ||||| || |||| ||| ||||||  ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||| ||| |||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttct 21880170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 9483003 - 9482952
Alignment:
Q  100 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||| ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  9483003 gtgtcgcgtccgacaccgacacatataattacactgaattgtgtgattttct 9482952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 43027409 - 43027508
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct-----gacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||| | |||| ||| ||||||| ||||| ||||||||||||||||     ||||||||||| | || |||||||||||| |||||||||    
T  43027409 aagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacacgacaccgacacttgtatttacactgcattatgtgatttt 43027508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 27945099 - 27945000
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    ||||||||||| | ||||||||||| ||| ||| |||||||       ||||| ||||||||||||| || |||||||||| | |||||||||| |||||    
T  27945099 gacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgt 27945000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 12278941 - 12278853
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcg-tgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||| |||| ||||||||||| ||||| |||||| || | |||| ||||| ||||||||||||||||||| ||| ||| |||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttct 12278853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 32093959 - 32094020
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtcccc-gtgtccgacacgtgtcgtgtctgacac 115  Q
    |||||||||||||||| |||| ||| |||||||| ||||| ||||||||||||||| |||||    
T  32093959 aagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacac 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Original strand, 5409776 - 5409836
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| |||||    
T  5409776 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 9778619 - 9778559
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 115  Q
    ||||||| ||||||||||||| ||| ||||||| ||||| ||||||||| ||||| |||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 22602711 - 22602751
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttct 22602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 26033398 - 26033461
Alignment:
Q  58 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    |||| |||||||| |||| ||||||||| | || || |||||||||| ||||||||||||||||    
T  26033398 cacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacac 26033461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 1433512 - 1433409
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    |||||||||||||||||||||||   ||  |||||||||||       |||   |||||||||||||  | |||||||||| ||||||||||||| ||||    
T  1433512 gacaccgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgcccgt 1433413  T
Q  211 atcc 214  Q
    ||||    
T  1433412 atcc 1433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 21140987 - 21141086
Alignment:
Q  115 ccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    ||||||| |||||| |||||| ||| | |||||||||       ||||| |||||| |||||| |  |||||||||| | ||||||||||||||||||||    
T  21140987 ccgacacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatcc 21141086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 177
Target Start/End: Complemental strand, 22868153 - 22868034
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----tgacaccgacacatataattacactgcattttgtgattttctnnnnnn 157  Q
    |||||||| |||| | ||||||||| ||||| ||||||||| ||||      ||| || ||||||||||||||||||| ||| |||||||||||          
T  22868153 acactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgattttctcatatt 22868054  T
Q  158 nttagttgtgtcggcgtgtc 177  Q
     ||||| |||||||||||||    
T  22868053 attagtggtgtcggcgtgtc 22868034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 23859985 - 23860035
Alignment:
Q  164 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||||||| ||||| |||||| |||||| |||| |||||||||||||||||    
T  23859985 tgtgtcggtgtgtcagtatccatgtcgtgttcgatgtccgtgtccgtatcc 23860035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 24339767 - 24339701
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    |||||||  ||||||| |||| ||| ||||||| ||||| || |||||||||||| |||||||||||    
T  24339767 aagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacac 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 26733410 - 26733324
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||| ||| |||| ||| |||| ||||| || |||| | |||||||| ||||||||||||| |||||| |||| ||| |||||||||    
T  26733410 acacccctcggattaggcgtgttcccgtatcggacatgcgtcgtgtccgacaccgacacatttaattagactgaattatgtgatttt 26733324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 1401129 - 1401043
Alignment:
Q  63 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||  ||| |||||||||||  |||| ||||  ||||||||| |||||||| || ||||||||||||| ||| ||||| |||||    
T  1401129 acactcctcagattaggtgtgtcccgatgtcggaca--tgtcgtgtcggacaccgatacttataattacactgaattatgtgagtttct 1401043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 21864896 - 21864843
Alignment:
Q  81 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 134  Q
    ||||||| ||||| ||||||||||||||| |||| |||||| | ||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacact 21864843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 22484104 - 22484059
Alignment:
Q  90 tgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    |||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  22484104 tgtcggacatgtgtcatgtctgacaccgacacatataattatactg 22484059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 9408413 - 9408445
Alignment:
Q  182 tccgtgtcgttttcggtgtccgtgtccgtatcc 214  Q
    |||||||||| ||||||||||||||||||||||    
T  9408413 tccgtgtcgtattcggtgtccgtgtccgtatcc 9408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 8912 - 8746
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| | ||||||  ||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | ||||||||||  ||  | ||||||| |       
T  8912 aagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaa 8813  T
Q  155 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 221  Q
        |||| |||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||    
T  8812 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttc 8746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 210
Target Start/End: Complemental strand, 13520 - 13359
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca------catataattacactgcattttgtgattt 148  Q
    ||||||| ||||||||||||| ||||||||||  ||||| ||| ||||||||||| ||||||||||      | | ||||| ||||| ||| ||||||||    
T  13520 aagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtgattt 13421  T
Q  149 tctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    |||       ||||||||||||||||||| || |||||||| | | |||||||||| |||||    
T  13420 tctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgt 13359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 210
Target Start/End: Original strand, 21807 - 21968
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca------catataattacactgcattttgtgattt 148  Q
    ||||||| ||||||||||||| ||||||||||  ||||| ||| ||||||||||| ||||||||||      | | ||||| ||||| ||| ||||||||    
T  21807 aagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtgattt 21906  T
Q  149 tctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 210  Q
    |||       ||||||||||||||||||| || |||||||| | | |||||||||| |||||    
T  21907 tctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgt 21968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 70392 - 70298
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 149  Q
    |||||||||||||| | |||| |||  |||||  ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||| ||| |||||    
T  70392 aagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttatttt 70298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 5997 - 6037
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5997 gacaccgacacatataattacactgcattttgtgattttct 6037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 5932 - 5983
Alignment:
Q  57 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgt 108  Q
    ||||| ||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  5932 gcacggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgt 5983  T

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Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 14641 - 14520
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 154  Q
    ||||||| ||||||||| ||| ||| ||||| | ||||| ||||||||||||||| |||||   ||| | ||||||||||| ||| ||||||||| |       
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac---cacttgtaattacactgaattatgtgattttttcaa 14545  T
Q  155 nnnnttagttgtgtcggcgtgtccg 179  Q
        |||||||||||||||||||||    
T  14544 attattagttgtgtcggcgtgtccg 14520  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 90923 - 90861
Alignment:
Q  89 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| ||||||||| |||||||||| ||||| |||||||||||||| ||| | |||||||||    
T  90923 gtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttct 90861  T

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Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 17844 - 17788
Alignment:
Q  95 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||| |||||||||||||||||||||||| |||||||| |  || |||||||||||    
T  17844 gacacatgtcgtgtctgacaccgacacatacaattacaccgagttgtgtgattttct 17788  T

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Target: scaffold0083 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 45475 - 45555
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 135  Q
    ||||||| ||| || |||||| |||  |||| | ||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  45475 aagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactg 45555  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 130538 - 130430
Alignment:
Q  113 caccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 212  Q
    ||||||||| | ||||||||||| ||| ||||||||| |       |||  ||||||||| ||||  | |||||||||| | ||||||||||||||||||    
T  130538 caccgacacttgtaattacactgaattatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtccgtat 130439  T
Q  213 ccattcttc 221  Q
    |||| ||||    
T  130438 ccatgcttc 130430  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 241719 - 241653
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    ||||||| ||||| || |||| ||| ||||||| ||||| ||||||||||||||| |||||| ||||    
T  241719 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacac 241653  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 4826 - 4922
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct--gacaccgacacatataattacactgcattttgtgatttt 149  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||    |||||| |||| | ||||||||||| ||| |||||||||    
T  4826 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgatttt 4922  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 8715 - 8662
Alignment:
Q  55 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgt 108  Q
    ||||||| ||||||||||||| ||| || |||| ||||| ||||||||||||||    
T  8715 aagcacggacactccttggattaggcgtatcccagtgtcggacacgtgtcgtgt 8662  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 44529 - 44566
Alignment:
Q  114 accgacacatataattacactgcattttgtgattttct 151  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  44529 accgacacatataattacactgaattatgtgattttct 44566  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 3052 - 2987
Alignment:
Q  56 agcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 121  Q
    |||||| |||||||| |||| ||| |||| || |||||  ||||||||||||||||| ||||||||    
T  3052 agcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacac 2987  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 9748 - 9788
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  9748 gacaccgacacatataattacactgaattaagtgattttct 9788  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 135313 - 135353
Alignment:
Q  111 gacaccgacacatataattacactgcattttgtgattttct 151  Q
    ||||||||||||||||||||||| | ||| |||||||||||    
T  135313 gacaccgacacatataattacacagaattatgtgattttct 135353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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