View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1279_low_15 (Length: 216)
Name: NF1279_low_15
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 428887 - 429056
Alignment:
| Q |
19 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
118 |
Q |
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| T |
428887 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
428986 |
T |
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| Q |
119 |
aatagaagaaaaggcttgtcaacaaaggccacaaagagagagaagaaaatgttcaaagtttcaaaatatt |
188 |
Q |
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| T |
428987 |
aatagaagaaaaggcttgtcaacaaaggccacaaagagagagaagaaaatgttcaaagtttcagaatatt |
429056 |
T |
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Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 30640630 - 30640461
Alignment:
| Q |
19 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30640630 |
ctttgaaccattatccttttcctttgtttctaatctttgaaccgtgtggtggaaagcctaatccaccaaattaggcgccaaaactgaattacacatatat |
30640531 |
T |
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| Q |
119 |
aatagaagaaaaggcttgtcaacaaaggccacaaagagagagaagaaaatgttcaaagtttcaaaatatt |
188 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
30640530 |
aatagaataaaaggtttgtcaacaaaggccacaaagagagagaagaaaatgttcgaagtttcagaatatt |
30640461 |
T |
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