View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1279_low_3 (Length: 550)
Name: NF1279_low_3
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 65 - 522
Target Start/End: Original strand, 3416085 - 3416548
Alignment:
| Q |
65 |
aattctagacatgtgcttttacatggttgt---agatgaacgattggtgatgaaattataataaaagtgatggctgatacatgggtgtaatctc---aaa |
158 |
Q |
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| T |
3416085 |
aattctagacatgtgcttttacatggttgttgtagatgaacgattggtgatgaaattataataaaagtgatggctgatacatgggtgtaatctcctcaaa |
3416184 |
T |
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| Q |
159 |
accaaagtgtatatgatgttggatggagagagaatatgtgatactaataaaattcattatttgtttcttgatgagagattgtagaagtattctagatcgt |
258 |
Q |
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| T |
3416185 |
accaaagtgtatatgatgttggatggagagagaatatgtgatactaataaaattcattatttgtttcttgatgagagattgtagaagtattctagatcgt |
3416284 |
T |
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| Q |
259 |
gcctctttttgagtcagaaagagttgataagctaaattatgttgaagatcaaattgagtgttatgtagttaagcttgaatacaatagaatgacgagggat |
358 |
Q |
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| T |
3416285 |
gcctctttttgagtcagaaagagttgataagctaaattatgttgaagatcaaattgattgttatgtagttaagcttgaatacaatagaatgacgagggat |
3416384 |
T |
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| Q |
359 |
attttgtgtagtgatagatttcacgtcttcatgagaccagaaaagtgtatggcaaatccaagctccatgaagtagtaagaaaaaatggttgtggaataat |
458 |
Q |
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| T |
3416385 |
attttgtgtagtgatagatttcacgtcttcatgagaccagaaaagtgtatggcaaatccaagctccatgaagtagtaagaaaaaatggttgtggaataat |
3416484 |
T |
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| Q |
459 |
agttacttgtcagcaaagcaatatatatggcgagcaatttatataccaaagaagtctacttatt |
522 |
Q |
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| T |
3416485 |
agttacttgtcagcaaagcaatatatatggcaagcaatttatataccaaagaagtctacttatt |
3416548 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 46889168 - 46889120
Alignment:
| Q |
65 |
aattctagacatgtgcttttacatggttgtagatgaacgattggtgatg |
113 |
Q |
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||||||||||||||| ||| ||||| ||||||||| | ||||||||||| |
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| T |
46889168 |
aattctagacatgtgttttcacatgcttgtagatggaggattggtgatg |
46889120 |
T |
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