View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1279_low_4 (Length: 509)
Name: NF1279_low_4
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 226 - 499
Target Start/End: Original strand, 3698680 - 3698957
Alignment:
| Q |
226 |
tgccgcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgc |
325 |
Q |
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| T |
3698680 |
tgccgcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgc |
3698779 |
T |
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| Q |
326 |
ccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacaccaaggggtaaataa |
425 |
Q |
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| T |
3698780 |
ccacctcatttctgcaagagcagtggttccattgctcgccacattcttcaacagttgcagaacatgaaccttattgagatggacaccaaggggtaaataa |
3698879 |
T |
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| Q |
426 |
ctcattatccttgttagtttgctatagtttgaaatatggttgtta----caatgaagagaatagtaacagtagaatta |
499 |
Q |
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| T |
3698880 |
ctcattatccttgttagtttgctatagtttacaatacggttgttaccagcaatgaagagaatagtaacagtagaatta |
3698957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 3703628 - 3703777
Alignment:
| Q |
230 |
gcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgcccac |
329 |
Q |
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| T |
3703628 |
gcagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagccagaggaatggcagtcgcccac |
3703727 |
T |
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| Q |
330 |
ctcatttctgcaagagcagtggttccattgctcgccacattcttcaacag |
379 |
Q |
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| T |
3703728 |
ctcatttctgcaagagcagtggttccattgctcgccacattcttcaacag |
3703777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 3703501 - 3703578
Alignment:
| Q |
100 |
actatacgtttgatgtggactatgtcagagctggtgagtttcttttttgtgtatgagtgatttgtcaaaacttctgaggaac |
181 |
Q |
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| T |
3703501 |
actatacgtttgatgtggactatgtcagagctggtgagtttc----ttgtgtttgagagatttgtcaaaacttctgaggaac |
3703578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 3698574 - 3698631
Alignment:
| Q |
118 |
actatgtcagagctggtgagtttcttttttgtgtatgagtgatttgtcaaaacttctgag |
177 |
Q |
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| T |
3698574 |
actatgtcagagctggtgagtttc--ttttgtgtttgagtgatttgtcaaaacttttgag |
3698631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 411
Target Start/End: Original strand, 3706871 - 3706928
Alignment:
| Q |
354 |
ccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacac |
411 |
Q |
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| T |
3706871 |
ccattgctcgtcacattctccaacagttgcagaacatggacatcattgaaatggacac |
3706928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 231 - 420
Target Start/End: Complemental strand, 15179567 - 15179378
Alignment:
| Q |
231 |
cagcttccattgcaaggaagatctacttgaggggtggactcggtgttggtgcattccagaggatttatggtggaagtcagaggaatggcagtcgcccacc |
330 |
Q |
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|||||||||| |||||||| |||||| | || || || || ||||||||| |||||||||||||||| ||||| |||||||||||||| ||||| || || |
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| T |
15179567 |
cagcttccatggcaaggaaaatctacgtaagaggcggtcttggtgttggttcattccagaggatttacggtgggagtcagaggaatggaagtcgtcctcc |
15179468 |
T |
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| Q |
331 |
tcatttctgcaagagcagtggttccattgctcgccacattcttcaacagctgcagaacatgaaccttattgagatggacaccaaggggta |
420 |
Q |
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| T |
15179467 |
ccatttctgcaagagcagtggtgctattgctcgtcacattcttcaacagttggagaacatgaacctcatcgagatggataccaaggggta |
15179378 |
T |
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