View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1279_low_5 (Length: 392)
Name: NF1279_low_5
Description: NF1279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1279_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 42189880 - 42190175
Alignment:
| Q |
12 |
aaaggttgtccttcatactccaaattaatggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatctgtcgatttagttaaa |
111 |
Q |
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| T |
42189880 |
aaaggttgtccttcatactccaaat----ggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatctgtcgatttagttaaa |
42189975 |
T |
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| Q |
112 |
ttttggcttaaatagttaaatctcaaatctgatgtagaaattatacttcaccatcaatcccaacaggtgaaattaaacttggatgcaagtggaggaacca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
42189976 |
ttttggcttaaatagttaaatctcaaatctgatgtagaaattatacttcatcatcaatcccaataggtgaaattaaacttggatgcaagtggaagaacca |
42190075 |
T |
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| Q |
212 |
atataagcagcaatagaactcataatttcccctcaggttccaatgcacatttagtttaagcctaaaaagaggtataacagtgctactccaaattcgaaat |
311 |
Q |
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| T |
42190076 |
atataagcagcaatagaactcataatttcccctcaggttccaatgcatatttagtttaagcctaaaaagaggtataacagtgctactccaaattcgaaat |
42190175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 19533409 - 19533328
Alignment:
| Q |
11 |
caaaggttgtccttcatactccaaattaatggtcctttcacacaccaggtacgtacatacatagattatcggtccaatctgaatct |
96 |
Q |
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||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |
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| T |
19533409 |
caaaggtcgtccttcgtactccaaat----ggtcctttcacacaacaggtacgtacatacataaattatcgatccaatctgaatct |
19533328 |
T |
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