View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280-Insertion-1 (Length: 810)
Name: NF1280-Insertion-1
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280-Insertion-1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 193 - 810
Target Start/End: Complemental strand, 8542945 - 8542328
Alignment:
| Q |
193 |
attcaagaggagtttgaaacatatnnnnnnnttgttacatttattaatcatatattgaaattaaattttatatatgttatcaatgtataaacatttttaa |
292 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8542945 |
attcaagaggagtttgaaacatataaaaaaattgttacatttattaatcatatattgaaattaaattttatatatgttatcaatgtataaacatttttaa |
8542846 |
T |
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| Q |
293 |
catttgtcacatttctaatctttcttttttgaaggaacatttctaatcttatatcaatttaatttcaacataagattaatacatgtaacaatttcaaatg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8542845 |
catttgtcacatttctaatctttcttttttgaaggaacatttctaatcttatatcaatttaatttcaacataagattaatacatgtaacaatttcaaatg |
8542746 |
T |
|
| Q |
393 |
ttttaaactccttttaaatgtccaagtctttaaattcaaagaaagaaaacatcaaccaattttgagtactaattaaaatgcctgagcaatttctggattt |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8542745 |
ttttaaactccttttaaatgtccaagtctttaaattcaaagaaagaagacatcaaccaattttgagtactaattaaaatgcctgagcaatttctggattt |
8542646 |
T |
|
| Q |
493 |
aaacaacttctaagagtgtctaaaactctaacatcagtagagttttgaaacatgagtgacaaacacatccctagccattcttgatactatcagaaagctc |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8542645 |
aaacaacttctaagagtgtctaaaactctaacatcagtagagttttgaaacatgagtgacaaacacatccctagccattcttgatactatcagaaagctc |
8542546 |
T |
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| Q |
593 |
gagcannnnnnnncttcttccaccagacaactagtttaaacttattgtctccattcatgttgtcttcatccaaatacctctcaatctcatttttatgatc |
692 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8542545 |
gagcattttttttcttcttccaccagacaactagtttaaacttattgtctccattcatgttgtcttcatccaaatacctctcaatctcatttttatgatc |
8542446 |
T |
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| Q |
693 |
tattggagtttctcatttaaaaaatgctcaaaagcatcaaatctagctaaatgtgttggttggttagctgaaacactacttcctacaatcgacaccctct |
792 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8542445 |
tattggagtttctcatttaaaaaatgctcaaaagcatcaaatctagctaaatgtgttggttggttagctgaaacactacttcctacaattgacaccctct |
8542346 |
T |
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| Q |
793 |
tgattatgccgtattcct |
810 |
Q |
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| T |
8542345 |
tgattatgccgtattcct |
8542328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 644 - 686
Target Start/End: Original strand, 8543213 - 8543255
Alignment:
| Q |
644 |
cattcatgttgtcttcatccaaatacctctcaatctcattttt |
686 |
Q |
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| T |
8543213 |
cattcatgttgtcttcatccaaataccactcaatctcattttt |
8543255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 8542945 - 8542994
Alignment:
| Q |
419 |
tctttaaattcaaagaaagaaaacatcaaccaattttgagtactaattaa |
468 |
Q |
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||||||||||||||||||||| | || |||||||| ||||| |||||||| |
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| T |
8542945 |
tctttaaattcaaagaaagaatatattaaccaattatgagtgctaattaa |
8542994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 6037210 - 6037073
Alignment:
| Q |
8 |
cttccccatttgcactagaagaatacattgagaaacagctcttaactgacaaaaattcttctttttcaccttgttcttcattacctccctcctttgcctt |
107 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037210 |
cttccccatttgcacttgaagaatacattgagaaacagctcttaactgacaaaaattcttctttttcaccttgttcttcattacctccctcctttgcctt |
6037111 |
T |
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| Q |
108 |
tggttccattttcccggtaacacataattctcttgttg |
145 |
Q |
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| T |
6037110 |
tggttccattttcccagtaacacataattctcttgttg |
6037073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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