View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1280-Insertion-3 (Length: 290)
Name: NF1280-Insertion-3
Description: NF1280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1280-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 8400849 - 8400633
Alignment:
| Q |
7 |
accattaacctaaataatatattttatttatttgatgggtactacaatattaacctaacacaatgatgttgagtttgtttatgctatgcaggatatttag |
106 |
Q |
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| T |
8400849 |
accattaacctaaataatatattttatttatttgatgggtactacaatattaacctaacacaatgatgttgagtttgtttatgctatgcaggatatttag |
8400750 |
T |
|
| Q |
107 |
ctcactattgaaatttgattgttgtgtcacttatggcttgctttgtatcaaggtacnnnnnnnnngtgtagtaggatttccacaagacatagtcatgtag |
206 |
Q |
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| T |
8400749 |
ctcactattgaaatttgattgttgtgtcacttatggcttgctttgtatcaagttactttttttttgtgtagtaggatttccacaagacatagtcatgtag |
8400650 |
T |
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| Q |
207 |
attaaatcatttgctta |
223 |
Q |
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| T |
8400649 |
attaaatcatttgctta |
8400633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 7811040 - 7811080
Alignment:
| Q |
181 |
gatttccacaagacatagtcatgtagattaaatcatttgct |
221 |
Q |
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| T |
7811040 |
gatttacacaagacatagtcatgtagattaaatcatttgct |
7811080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 15292451 - 15292491
Alignment:
| Q |
181 |
gatttccacaagacatagtcatgtagattaaatcatttgct |
221 |
Q |
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| T |
15292451 |
gatttacacaagccatagtcatgtagattaaatcatttgct |
15292491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 48908299 - 48908259
Alignment:
| Q |
181 |
gatttccacaagacatagtcatgtagattaaatcatttgct |
221 |
Q |
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| T |
48908299 |
gatttacacaagacatagtcatgtatattaaatcatttgct |
48908259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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