View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12800_high_1_N (Length: 518)
Name: NF12800_high_1_N
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_high_1_N |
 | |
|
| [»] chr4 (16 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 518
Target Start/End: Complemental strand, 4008501 - 4007987
Alignment:
| Q |
7 |
cagagatagcgtataat---tttccaggacaagatctaactaagagttggatcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccct |
103 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4008501 |
cagagatagcatataataaatttccaggacaagatctaactaagagttggatcaatgaactgccattatcttttggatctcaaagcacgctagaaaccct |
4008402 |
T |
|
| Q |
104 |
gattttaagaggctgtagaattgagaggataccttcaagcatnnnnnnncttactagactaagatatataaacctgaccttttgcatcaagcttatgact |
203 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
4008401 |
gattttcaaaggctgtagaattgagaggatacctccaagcataaaaaatcgtactagactaagatatataaacctgactttttgcatcaagcttcggact |
4008302 |
T |
|
| Q |
204 |
ctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtattgttcccattaacagcttctgaacagttcaagaaaa |
303 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||| |
|
|
| T |
4008301 |
ataccagagcttccatcatcacttgaaactctattggctgaatgtgaatcactgaagactgtatggttccctttaacagcttctgaacagttcaaggaaa |
4008202 |
T |
|
| Q |
304 |
acaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataatgaagtttacata |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4008201 |
acaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataatgaagtttgcata |
4008102 |
T |
|
| Q |
404 |
tcaacatttatcgacactggaacataactatgttgaaagtaatgttgattacaaacatacgtttggttcttatcaagcattgtatgtgtatctaggaagt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
4008101 |
tcaacatttatcgacactggaacataactatgttgaaagtaatgttgattacaaacaaacgtttggttcttatcaagcattttatgtgtatccaggaagt |
4008002 |
T |
|
| Q |
504 |
agtgttccagagtgg |
518 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
4008001 |
accgttcctgagtgg |
4007987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 320 - 516
Target Start/End: Complemental strand, 3999180 - 3998984
Alignment:
| Q |
320 |
gttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataatgaagtttacatatcaacatttatcgaca |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||| |
|
|
| T |
3999180 |
gttatggaattgtttgaacctggataaacgttctcacataaatgttgagttgaatattcaaatcaatataataaagtttgcatatcaacattattcgaca |
3999081 |
T |
|
| Q |
420 |
ctggaacataactatgttgaaagtaatgttgattacaaacatacgtttggttcttatcaagcattgtatgtgtatctaggaagtagtgttccagagt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||||| |||||| |
|
|
| T |
3999080 |
ttggaacataactatgttgaaagtaatgttgattacaaacataagtttggttcttatcaagcattgtatgtttatccaggaagcagtgtttcagagt |
3998984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 35 - 518
Target Start/End: Complemental strand, 4023628 - 4023145
Alignment:
| Q |
35 |
agatctaactaagagttggatcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggata |
134 |
Q |
| |
|
|||||||||||| | ||| ||||||| |||||||| |||||||||| |||||||| |||||||| ||| |||||||| | || ||||||||| ||| |
|
|
| T |
4023628 |
agatctaactaacatttgtatcaatgcactgccatcatcttttggatgtcaaagcaggctagaaatactggttttaagatacagtgaaattgagagcata |
4023529 |
T |
|
| Q |
135 |
ccttcaagcatnnnnnnncttactagactaagatatataaacctgaccttttgcatcaagcttatgactctaccagtgcttccatcatcacttgaaactc |
234 |
Q |
| |
|
||||||||||| ||||| ||||||||| | || || | |||||| ||||| || |||||| | |||||| |||||| ||||||||| |
|
|
| T |
4023528 |
ccttcaagcatcaagaatcttacaagactaagaaaattagacatacgattttgctcaaagctcctggttctacccgagcttccttcatcagttgaaactc |
4023429 |
T |
|
| Q |
235 |
tattgggtgaatgtgaatcactaaagactgtattgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgttt |
334 |
Q |
| |
|
|| | | ||||||| |||||| ||||||||||||||||| | ||||| ||||||||| |||||| |||||||||||||| || ||| |||||||| | |
|
|
| T |
4023428 |
tacttgttgaatgtagatcactgaagactgtattgttcccttcaacagtttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgctg |
4023329 |
T |
|
| Q |
335 |
gaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataatgaagtttacatatcaacatttatcgacactggaacataactat |
434 |
Q |
| |
|
|||| ||||| ||| |||||| |||||||||| ||||||| | ||||| ||| | || |||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
4023328 |
gaacttggatgaacattctctcataaatattgggttgaatctgcaaatgaatttgataaagtttacatatcaacatttatcgacactggaacatgatcac |
4023229 |
T |
|
| Q |
435 |
gttgaaagtaatgttgattacaaacatacgtttggttcttatcaagcattgtatgtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
||||||||| |||||||||||||| ||| |||| ||||||||||||| ||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
4023228 |
gttgaaagttatgttgattacaaagataactttgattcttatcaagcagtgtatgtttatcctggaagtagtattccagagtgg |
4023145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 54 - 518
Target Start/End: Complemental strand, 3985533 - 3985069
Alignment:
| Q |
54 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcatnnnnnnnc |
153 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||||||| | ||||||||| |||||||||||||| | |
|
|
| T |
3985533 |
atcaatgcactgccatcatcttttggatgtcaaagcaagctagaaaccctggttttaagaggtactcaaattgagagcataccttcaagcatcaaggatc |
3985434 |
T |
|
| Q |
154 |
ttactagactaagatatataaacctgaccttttgcatcaagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatc |
253 |
Q |
| |
|
|||| ||||||||| | || || | | | |||| ||||| || ||||||| | ||||||||||||||||||||||||| | | ||| |||| || |
|
|
| T |
3985433 |
ttacaagactaagaaaattagacataagcgattgctcggagcttctggctctacctgagcttccatcatcacttgaaactctacttgttgactgtgtgtc |
3985334 |
T |
|
| Q |
254 |
actaaagactgtattgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttct |
353 |
Q |
| |
|
||| ||| ||||||| ||||| | ||||| | ||||||| || ||| |||||||||||||| || ||| |||||||| || || ||||| |||||||| |
|
|
| T |
3985333 |
actgaagtctgtatttttcccttcaacagttgctgaacaattaaaggaaaacaagaaaaggattgagttctggaattgcttcaaattggatgaacgttct |
3985234 |
T |
|
| Q |
354 |
cttataaatattgagttgaatattcaaatcaatataatgaagtttacatatcaacatttatcgacactggaacataactatgttgaaagtaatgttgatt |
453 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
3985233 |
ctcataaatattgggttgaatcttcaaatcaatttgatggagtttgcatatcaacatttatcgacactggaacatgataaagttgaaagctatgttgatt |
3985134 |
T |
|
| Q |
454 |
acaaacatacgtttggttcttatcaagcattgtatgtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
||||| ||| ||| ||||||||||||| ||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3985133 |
acaaagatatccttgattcttatcaagcagtgtatgtatatcctggaagtagtgttccagagtgg |
3985069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 54 - 518
Target Start/End: Original strand, 3921622 - 3922092
Alignment:
| Q |
54 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcatnnnnnnnc |
153 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||| | | | ||||||||| |||| ||||||||| | |
|
|
| T |
3921622 |
atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctgaatttaagtgacactgaaattgagagcatacattcaagcatcaagaatc |
3921721 |
T |
|
| Q |
154 |
ttactagactaagatatataaacctgaccttttgcatcaagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaa---tgtga |
250 |
Q |
| |
|
|||| ||||||||| | || || | |||| || ||||||| || |||||| | |||||| |||||| |||||| |||| | | ||| ||||| |
|
|
| T |
3921722 |
ttacaagactaagaaaattatacatacgattttccaacaagcttctggttctacccgagcttccttcatcagttgaaagtctacttgttgacaactgtga |
3921821 |
T |
|
| Q |
251 |
atcactaaagactgtattgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgt |
350 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| | ||||||| |||||| ||||||||||||||||| ||| |||||||| || ||| ||||| ||| | |
|
|
| T |
3921822 |
atcactaaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagggttgagttctggaattgcttcaacttggatgaactt |
3921921 |
T |
|
| Q |
351 |
tctcttataaatattgagttgaatattcaaatcaatataatgaagtttacatatcaacatttatcgacactggaacataac---tatgttgaaagtaatg |
447 |
Q |
| |
|
||||| |||||||||| ||||||| | ||||||||| | |||||||||||| ||||||||||||| |||||||||||| | |||| ||||||| ||| |
|
|
| T |
3921922 |
tctctgataaatattgggttgaatctgcaaatcaatttgatgaagtttacacatcaacatttatcaacactggaacatgatgaatatgctgaaagttatg |
3922021 |
T |
|
| Q |
448 |
ttgattacaaacatacgtttggttcttatcaagcattgtatgtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
3922022 |
ttgattacaaagataactttgattcttatcaagcagtgtatgtgtatcctggaagtagtgttccaaagtgg |
3922092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 192 - 518
Target Start/End: Complemental strand, 4000555 - 4000226
Alignment:
| Q |
192 |
aagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtattgttcccattaacagcttctgaac |
291 |
Q |
| |
|
|||||| || ||||||| |||||||| | |||| ||||||||||| | | ||||||| |||||| ||||||||||||||||| | |||| |||||||| |
|
|
| T |
4000555 |
aagcttctggctctacctgtgcttcctttatcagttgaaactctacttgttgaatgtatatcactgaagactgtattgttcccttcaacaatttctgaac |
4000456 |
T |
|
| Q |
292 |
agttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataat |
391 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||| || ||| ||||| ||| |||||| ||||||||| ||| ||||| |||||||| |||| |
|
|
| T |
4000455 |
aattcaaggaaaacaagaaaaggattgagttctggaattgcttcaacttggatgaacattctctcgtaaatattgggttcaatatgaaaatcaatctaat |
4000356 |
T |
|
| Q |
392 |
gaagtttacatatcaacatttatcgacactggaac---ataactatgttgaaagtaatgttgattacaaacatacgtttggttcttatcaagcattgtat |
488 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| || | |||||||| ||| ||| ||||||| || ||| | ||||||||||||||||||| |
|
|
| T |
4000355 |
caagtttgcatatcaacatttattgacactggaacatgatgattatgttgacagttatgctgattacgaatataaccattcttcttatcaagcattgtat |
4000256 |
T |
|
| Q |
489 |
gtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
|| |||| ||||||||||||||||||||| |
|
|
| T |
4000255 |
gtatatcctggaagtagtgttccagagtgg |
4000226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 191 - 514
Target Start/End: Original strand, 3935110 - 3935436
Alignment:
| Q |
191 |
caagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtattgttcccattaacagcttctgaa |
290 |
Q |
| |
|
||||||| || ||||||| | |||| | |||||| |||||| |||| | | | | ||||| ||||| ||| ||||||||||||| | ||||| | ||||| |
|
|
| T |
3935110 |
caagcttctggctctacccgagctttcttcatcagttgaaattctacttgttcactgtgactcactgaagtctgtattgttcccttcaacagttgctgaa |
3935209 |
T |
|
| Q |
291 |
cagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataa |
390 |
Q |
| |
|
|| |||||| ||||||||||| ||| ||| |||||||| |||||| ||||| | |||||||| |||||||||| ||||||| | ||||||||| | | |
|
|
| T |
3935210 |
caattcaaggaaaacaagaaagaagttaagttctggaattgcttgaacttggatgagcgttctctgataaatattgggttgaatctgcaaatcaatttga |
3935309 |
T |
|
| Q |
391 |
tgaagtttacatatcaacatttatcgacactggaacataac---tatgttgaaagtaatgttgattacaaacatacgtttggttcttatcaagcattgta |
487 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| |||||||| | |||||||||| | |||||||||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
3935310 |
tgaagtttgcatatcaagatttatcaacagtggaacatgatgattatgttgaaacttatgttgattacaaagataactttgattcttatcaagcattgta |
3935409 |
T |
|
| Q |
488 |
tgtgtatctaggaagtagtgttccaga |
514 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
3935410 |
tgtgtattctggaagtagtgttccaga |
3935436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 518
Target Start/End: Original strand, 3957221 - 3957551
Alignment:
| Q |
192 |
aagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtattgttcccattaacagcttctgaac |
291 |
Q |
| |
|
|||||| || ||||||| | |||||| |||||| ||||||||||| | | ||||||||||||| | ||||||||||| ||||| | | | | || ||| |
|
|
| T |
3957221 |
aagcttgtggctctacccgagcttccttcatcagttgaaactctacttgttgaatgtgaatcattgaagactgtatttttccctt---ctgttgctcaac |
3957317 |
T |
|
| Q |
292 |
agttcaagaaaaacaa-gaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatattgagttgaatattcaaatcaatataa |
390 |
Q |
| |
|
| |||||| ||||||| ||||||| || ||| |||||||| |||||| ||||| || | ||||| |||||||||| ||||||| | || |||||| | | |
|
|
| T |
3957318 |
aattcaaggaaaacaaagaaaaggattgagttctggaattgcttgaacttggatgaatgctctctcataaatattgggttgaatgtgcagatcaatttga |
3957417 |
T |
|
| Q |
391 |
tgaagtttacatatcaacatttatcgacactggaacataa--ctatgt----tgaaagtaatgttgattacaaacatacgtttggttcttatcaagcatt |
484 |
Q |
| |
|
|||||||| |||||| ||||| | || ||||| |||| | ||| |||||| |||| |||||||||| ||| |||| ||||||||||||| | |
|
|
| T |
3957418 |
tgaagtttgcatatcgacattcagcggcactgttacatcatgctaaaagcaatgaaagcaatgctgattacaaagataaatttgattcttatcaagcagt |
3957517 |
T |
|
| Q |
485 |
gtatgtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| |
|
|
| T |
3957518 |
gtatttgtatcctggaagtagtgttccagagtgg |
3957551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 396
Target Start/End: Complemental strand, 3815949 - 3815805
Alignment:
| Q |
252 |
tcactaaagactgtattgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgtt |
351 |
Q |
| |
|
||||| ||||||||||||||||| | ||||| | ||||||| |||||| ||||||||||||| ||| ||| |||||||| |||| ||||| || ||| |
|
|
| T |
3815949 |
tcactgaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagtgttgagttctggaattgcgagaacttggatgaaagtt |
3815850 |
T |
|
| Q |
352 |
ctcttataaatattgagttgaatattcaaatcaatataatgaagt |
396 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
3815849 |
ctctcataaatgttgggttgaatgttcaaatcaatttaatgaagt |
3815805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 54 - 396
Target Start/End: Complemental strand, 3808576 - 3808231
Alignment:
| Q |
54 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcatnnnnnnnc |
153 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||| ||||||||||||| |||||| | || ||||||||| |||||||||||||| | |
|
|
| T |
3808576 |
atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctgaatttaagttacactaaaattgagagcataccttcaagcatcaaggatc |
3808477 |
T |
|
| Q |
154 |
ttactagactaagatatataaacctgaccttttgcatcaagcttatgactctaccagtgcttccatcatcacttgaaactcta-ttgggtgaa--tgtga |
250 |
Q |
| |
|
|||| ||||||||| | || || | ||||| |||||| || ||||||| | |||||| |||||| ||||||||||| ||| | | ||| |
|
|
| T |
3808476 |
ttacaagactaagaaaattagacatacaaggttgcaaaaagcttctgtctctacccgagcttccttcatcagttgaaactctacttgttagcagctgtag |
3808377 |
T |
|
| Q |
251 |
atcactaaagactgtattgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgt |
350 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||| | ||||||| |||||| ||||||||||||| ||| ||| ||| |||| |||| ||||| || || |
|
|
| T |
3808376 |
atcactgaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagtgttgagttctggcattgcaagaacttggatgaaagt |
3808277 |
T |
|
| Q |
351 |
tctcttataaatattgagttgaatattcaaatcaatataatgaagt |
396 |
Q |
| |
|
||||| |||||| ||| ||||||| ||||||||||| ||||||||| |
|
|
| T |
3808276 |
tctctcataaatgttgggttgaatgttcaaatcaatttaatgaagt |
3808231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 451
Target Start/End: Complemental strand, 3800195 - 3800006
Alignment:
| Q |
262 |
ctgtattgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaa |
361 |
Q |
| |
|
||||||||||||| | ||||| | ||| ||| || ||| |||||||||||| | || || |||||||| |||||| | || ||| |||||| ||| | |
|
|
| T |
3800195 |
ctgtattgttcccttcaacagttgctggacaattaaaggaaaacaagaaaatgattaacttttggaattgcttgaactttgaagaactttctctcataca |
3800096 |
T |
|
| Q |
362 |
tattgagttgaatattcaaatcaatataatgaagtttacatatcaacatttatcgacactggaacataactatgttgaaagtaatgttga |
451 |
Q |
| |
|
|| | ||||||| | || || ||| | ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
3800095 |
taattggttgaatctacagattaatttgatgaagtttgcatatcaacatttatcgacactggaacataagtatgctgaaagttatgttga |
3800006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 451
Target Start/End: Complemental strand, 4217035 - 4216974
Alignment:
| Q |
390 |
atgaagtttacatatcaacatttatcgacactggaacataactatgttgaaagtaatgttga |
451 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
4217035 |
atgatgtttgcatatcaacatttatcgacactggaacataagtatgatgaaagttatgttga |
4216974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 394
Target Start/End: Original strand, 3936823 - 3936950
Alignment:
| Q |
266 |
attgttcccattaacagcttctgaacagttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttctcttataaatatt |
365 |
Q |
| |
|
||||||||| | ||||| | ||||||| || ||| ||||||| ||||| ||| ||| |||||||| | |||| || |||| ||||||| ||||||||| |
|
|
| T |
3936823 |
attgttcccttcaacagttgctgaacaattaaaggaaaacaa-aaaagagttgagttctggaattgctggaacttgattaaatgttctctcataaatatt |
3936921 |
T |
|
| Q |
366 |
gagttgaatattcaaatcaatataatgaa |
394 |
Q |
| |
|
| ||||||| ||||||||||| ||||||| |
|
|
| T |
3936922 |
gggttgaatgttcaaatcaatttaatgaa |
3936950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 3934841 - 3934932
Alignment:
| Q |
54 |
atcaatgaactgccattgtcttttggatctcaaagcacgctagaaaccctgattttaagaggctgtagaattgagaggataccttcaagcat |
145 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||| |||||||||||| |||||| || | | ||||||||| |||||||||||||| |
|
|
| T |
3934841 |
atcaatgcactgccatcatcttttggatgtcaaagcaatctagaaaccctggttttaaaagccactcaaattgagagcataccttcaagcat |
3934932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 3808222 - 3808169
Alignment:
| Q |
465 |
tttggttcttatcaagcattgtatgtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
||||||||| || ||||| |||||||||||| ||||||| ||||||||||||| |
|
|
| T |
3808222 |
tttggttctgatgaagcaatgtatgtgtatcctggaagtaatgttccagagtgg |
3808169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 3815796 - 3815743
Alignment:
| Q |
465 |
tttggttcttatcaagcattgtatgtgtatctaggaagtagtgttccagagtgg |
518 |
Q |
| |
|
||||||||| || ||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3815796 |
tttggttctgatgaagcaatgtatgtgtatcctggaagtagtattccagagtgg |
3815743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 353
Target Start/End: Complemental strand, 13396241 - 13396080
Alignment:
| Q |
192 |
aagcttatgactctaccagtgcttccatcatcacttgaaactctattgggtgaatgtgaatcactaaagactgtattgttcccattaacagcttctgaac |
291 |
Q |
| |
|
|||||| || || |||| |||||||| |||||||||||||||||| | | ||||||| | ||||| ||| ||||| ||||||| | || || | | |||| |
|
|
| T |
13396241 |
aagcttctggctgtacctgtgcttccttcatcacttgaaactctaattgttgaatgtaagtcactgaagtctgtagtgttcccttcaaaagttaccgaac |
13396142 |
T |
|
| Q |
292 |
agttcaagaaaaacaagaaaagggttctgttatggaattgtttgaacctggataaacgttct |
353 |
Q |
| |
|
| |||||| |||||||||||||| | ||| |||||||| |||||| ||||| |||||||| |
|
|
| T |
13396141 |
aattcaaggaaaacaagaaaaggatagagttttggaattgcttgaacttggatgaacgttct |
13396080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University