View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_high_2 (Length: 489)
Name: NF12800_high_2
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 81 - 475
Target Start/End: Complemental strand, 54958453 - 54958056
Alignment:
| Q |
81 |
accaagaagaagtgtgaaaagatgttggtcctgaaaactctttcaagctgttgttcagtgatttcctctattgagtttttgaggtgttgttcagctgcat |
180 |
Q |
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| T |
54958453 |
accaagaagaagtgtgaaaagatgttggtcctgaaaactctttcaagctgttgttcagtgatttcctctattgagtttctgaggtgttgttcagctgcat |
54958354 |
T |
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| Q |
181 |
tgttgacaagaacatcaatgcg---tccatactctttgacaacaagttccacaacctgtttgcaattctcatcatatccaatatcagctgcaatagctaa |
277 |
Q |
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| T |
54958353 |
tgttgacaagaacatcaatgctgcttccatattcttttacaacaagttccacaacctgtttacaattctcatcatatccaatatcagcagcaattgctaa |
54958254 |
T |
|
| Q |
278 |
tggttcttgtgcatcatttgtcttggcttctagcaacatcttcagagtatcatccttatccctatcctcaacacctttcacgtatgtaaaggccactgtt |
377 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
54958253 |
tggttcttgtgcatcacttgtcttggcttctagcaacatcttcagagtatcatccttgtccctatcctcaacacctttcacgtatgtaaaggccactgtt |
54958154 |
T |
|
| Q |
378 |
gcaccctcttttgcaaatattagacacactgctcttcctatacctgagtcacctcctgtcaccaacgccacctttccctgtacaaatgacaacaacaa |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
54958153 |
gcaccctcttttgcaaatattagacacactgctcttcctatacctgagtcacctcctgtcaccaacgccacctttccctgtacaaatgacaataacaa |
54958056 |
T |
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