View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_high_3 (Length: 428)
Name: NF12800_high_3
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Complemental strand, 55171643 - 55171229
Alignment:
| Q |
14 |
agaaggttcaatgggatccagtcacaggagaaacacgtgctctctcctggttgaagacaagatttgccacaccagagggaagaggtccagttgccatcag |
113 |
Q |
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| T |
55171643 |
agaaggttcaatgggatccagtcacaggagaaacacgtgcactctcctggttgaagacaagatttgccacaccagagggaagaggtccagttgccatcag |
55171544 |
T |
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| Q |
114 |
gatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggacaacctagtcaaaca |
213 |
Q |
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| T |
55171543 |
gatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggacaacctagtcaagaa |
55171444 |
T |
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| Q |
214 |
gagtaccacatcccaagagattacctgaatgcaaaggacaatttgcttgttgtattggaagaggagaagggaagtccagaaaaaatagagataatgattg |
313 |
Q |
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| T |
55171443 |
gagtaccacatcccaagagattacctgaatgcaaaggacaatttgcttgttgtattagaagaggagaagggaagtccagaaaaaatagagataatgattg |
55171344 |
T |
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| Q |
314 |
ttgacagagatacaatctgcagttacattacagagaacagtcctgccaatgtcaattcttggggatctaagaacggagaatttcgttctgttggcaaaaa |
413 |
Q |
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| T |
55171343 |
ttgacagagatacaatctgcagttacattacagagaacagtcctgccaatgtcaattcttggggatctaagaacggagaatttcgttctgttggcaaaaa |
55171244 |
T |
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| Q |
414 |
ttctggaccacaagc |
428 |
Q |
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| T |
55171243 |
ttctggaccacaagc |
55171229 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 218
Target Start/End: Original strand, 27724266 - 27724384
Alignment:
| Q |
100 |
ccagttgccatcaggatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttggac |
199 |
Q |
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| T |
27724266 |
ccagttgccatcggaatggaaggtatggcaaaaggaatgatttgggttaatggtgaaagcattggtcgtcactggatgagctacctctctcctcttggaa |
27724365 |
T |
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| Q |
200 |
aacctagtcaaacagagta |
218 |
Q |
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| T |
27724366 |
agcctactcaatcagagta |
27724384 |
T |
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