View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_high_4 (Length: 360)
Name: NF12800_high_4
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_high_4 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 360
Target Start/End: Complemental strand, 1088210 - 1087857
Alignment:
| Q |
7 |
gtgagatgaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaa |
106 |
Q |
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| T |
1088210 |
gtgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaa |
1088111 |
T |
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| Q |
107 |
accatatagaacaaccactaccatctccagccacatccaagtttgaataagccacgcaagaacaatcttccaagcatttattcttacaattctcaagtgt |
206 |
Q |
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| T |
1088110 |
accatatagaacaaccactaccatctccagccacatccaagtttgaataagccatgcaagaacaatcttccaagcatttattcttacaattctcaagtgt |
1088011 |
T |
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| Q |
207 |
catattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacct |
306 |
Q |
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| T |
1088010 |
catatttgcatcaacccaagtatgtgatgtatctggcaatttcaatccataaaatcttacaaaactatcattcactccacatctccaatcttcgtcacct |
1087911 |
T |
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| Q |
307 |
ttgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgattta |
360 |
Q |
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| T |
1087910 |
ttgcgcacacatccttgtgtccaatttgatgcgtcccaattttttggcgattta |
1087857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 1047735 - 1047383
Alignment:
| Q |
8 |
tgagatgaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaa |
107 |
Q |
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| T |
1047735 |
tgagaagaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaagatctgtttcaagtcaataagatcaccaaa |
1047636 |
T |
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| Q |
108 |
ccatatagaacaaccactaccatctccagccacatccaagtttgaataagccacgcaagaacaatcttccaagcatttattcttacaattctcaagtgtc |
207 |
Q |
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| T |
1047635 |
ccatatagaacaaccactgccatctccagccacatccaagtttgaataagccatgcaagaacaattttccaagcatttatttttacaattctcaagtgtc |
1047536 |
T |
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| Q |
208 |
atattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacctt |
307 |
Q |
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| T |
1047535 |
atattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgcctt |
1047436 |
T |
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| Q |
308 |
tgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgattta |
360 |
Q |
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| T |
1047435 |
tgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggtgattta |
1047383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 1072545 - 1072196
Alignment:
| Q |
8 |
tgagatgaacatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaa |
107 |
Q |
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| T |
1072545 |
tgagaagaatatagcatttacctactgtggaagcatccattcgaatatatagatattgttggaatgttaaaatctgtcttaagtctataagatcaccaaa |
1072446 |
T |
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| Q |
108 |
ccatatagaacaaccactaccatctccagccacatccaagtttgaataagccacgcaagaacaatcttccaagcatttattcttacaattctcaagtgtc |
207 |
Q |
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| T |
1072445 |
ccatatggaacatccactaccatcact---cacatttaagtttgaataagccatacaagaacaatcttccaagcatttattcttacaattctcaagtgtc |
1072349 |
T |
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| Q |
208 |
atattagcatcaacccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacctt |
307 |
Q |
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| T |
1072348 |
atattagcatcaacccaagtatgtgttgtatctggcaatttcaatccagaaaatgttctaaaacgatcattcacaccacaattccatgtttcttcacctt |
1072249 |
T |
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| Q |
308 |
tgcgcacacatccttgtgtccaatttgatgcgtcccaattttgtggcgattta |
360 |
Q |
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| T |
1072248 |
tgcgcacacatccttgtgtccaatttgatgcgtaccaattttgtggtgattta |
1072196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 1104748 - 1104410
Alignment:
| Q |
22 |
catttacctactgtggaagcatccattcgaatatatagatattgttggaatgatgaaatctgtttcaagtctataagatcaccaaaccatatagaacaac |
121 |
Q |
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| T |
1104748 |
catttacctactgtggaagcatccattcgaacataaagatcttgttgaactgatgaaacttgtttcaaaccgataagatcaccaaaccatatagaacaac |
1104649 |
T |
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| Q |
122 |
cactaccatctccagccacatccaagtttgaataagccacgcaagaacaatcttccaagcatttattcttacaattctcaagtgtcatattagcatcaac |
221 |
Q |
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| T |
1104648 |
cactaccatctcccctaacatctaagtttgaataagccatgcaagaacaattttccaagcatttgttcttacaattctcaagtgtcatattaccatcaac |
1104549 |
T |
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| Q |
222 |
ccaagtatgtgatgtatccggcaatttcaatccataaaatcttacaaaaccatcattcaccccacatctccaatcttcttcacctttgcgcacacatcct |
321 |
Q |
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| T |
1104548 |
ccaagcatgtgttgtttctggcaatttcaaactagaaaatgttccaaaaccatcattcacaccacaattccatgtttcttcgccttttcgcacacatcct |
1104449 |
T |
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| Q |
322 |
tgtgtccaatttgatgcgtcccaattttgtggcgattta |
360 |
Q |
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| T |
1104448 |
tgtgtccaattaaatgtgtcccaattttgtggcgattta |
1104410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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