View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_high_7 (Length: 335)
Name: NF12800_high_7
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 14222941 - 14222761
Alignment:
| Q |
89 |
cgaagctttcagtatagtaaggtgtgaaatcccatattccgaaaacatcttattgatcaaccaaacaacagataaaagtaaatgcgataatgaagatgaa |
188 |
Q |
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| T |
14222941 |
cgaagctttcagta--gtaaggtgtgaaatcccatattccgaaaacatcttattgatcaaccaaacaacagataaaagtaaaagcgataatgaagatgaa |
14222844 |
T |
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| Q |
189 |
gagaaagagaaaaatacctggtgcgaatggaagaacatttgggagaaaatgaagaaagggttttggtgggttttttagtttca |
271 |
Q |
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| T |
14222843 |
gagaaagagaaaaatacctggagcgaatggaagaacatttgggagaaaatgaagaaagggttttggtgggttttttagtttca |
14222761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 325
Target Start/End: Complemental strand, 14222759 - 14222731
Alignment:
| Q |
297 |
gtttgcgcggcaactgtaccctacctttg |
325 |
Q |
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| T |
14222759 |
gtttgcgcggcaactgtaccctacctttg |
14222731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 14226768 - 14226736
Alignment:
| Q |
177 |
aatgaagatgaagagaaagagaaaaatacctgg |
209 |
Q |
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| T |
14226768 |
aatgaagatgaaaagaaagagaaaaatacctgg |
14226736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 16151954 - 16151997
Alignment:
| Q |
91 |
aagctttcagtatagtaaggtgtgaaatcccatattccgaaaacat |
136 |
Q |
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| T |
16151954 |
aagctttcagta--gtaaggtgtgaaatcccatattccaaaaacat |
16151997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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