View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_low_1 (Length: 395)
Name: NF12800_low_1
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 377
Target Start/End: Complemental strand, 1537238 - 1536879
Alignment:
| Q |
18 |
agcacattcatcaaaaacacaaagattgatcagacaaattacaacgaaatactaaaaccaattaatccaaatatttaaagtatatatctttgttcctata |
117 |
Q |
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| T |
1537238 |
agcacattcatcaaaaacacaaagattgatcagacaaattacaaccaaatactaaaaccaattaatccaaatatctaaagtatatatctttgttcctata |
1537139 |
T |
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| Q |
118 |
catctatgttatcacacagttatgacagaagcacgttgagcaaagttaaggattcttggtaacctttgaaggagaaatcaagtccttgtgttgagtggnn |
217 |
Q |
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| T |
1537138 |
catctatgttatcacacagttatgacagaagcacgttgagcaaagttaagggttcttggtaacctttgaaggagaaatcaagtccttgtgttgagtggtt |
1537039 |
T |
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| Q |
218 |
nnnnnnatttnnnnnnngcaagtccttatgctaagtggnnnnnnngaaacttcaaagagggttttgtgaaggaataaatttatgtactataaatcgacaa |
317 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
1537038 |
ttttttatttaaaaaaagcaagtccttatgctaagtggttttcttgaaacttcaaagagggttttgtgaaggaataaatttatgtactataagtcgacga |
1536939 |
T |
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| Q |
318 |
aggtggactcaattggtaagtagttgattcacttgcaaggtcgactctcccacaagatca |
377 |
Q |
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| T |
1536938 |
aggtggactcaattggtaagtagttaattcacttgcaaggtcgactctcccacaagatca |
1536879 |
T |
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