View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_low_2 (Length: 351)
Name: NF12800_low_2
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 29701056 - 29700715
Alignment:
| Q |
1 |
ccaacaatattgtttgataaaatggttttgatagttgctttgacatgaggtatgagactctccaaaaaagtcaagatgtaaaattctggagattttagta |
100 |
Q |
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| T |
29701056 |
ccaacaactttgtttgataaaatggttttgatagttgctttgacatgaggtatgagactctccaaaaaagtcaagatgtaaaattctggagattttagta |
29700957 |
T |
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| Q |
101 |
gctcttgtggaggtggttctacttcaggaagatcaatgagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcc |
200 |
Q |
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| T |
29700956 |
gctcttgtggaggtggttctacttcaggaagatcaatcagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcc |
29700857 |
T |
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| Q |
201 |
tggaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggt |
300 |
Q |
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| T |
29700856 |
tggaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggt |
29700757 |
T |
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| Q |
301 |
gcaggaatgaagatgagttctgatttcttgttcatctcactc |
342 |
Q |
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| T |
29700756 |
gcaggaatgaagatgagttctgaattcttgtttatatcactc |
29700715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 342
Target Start/End: Complemental strand, 29678494 - 29678255
Alignment:
| Q |
103 |
tcttgtggaggtggttctacttcaggaagatcaatgagttgaatttgtggttgtgaggctaaaactgatttgatatatgaatctgcaaagggcatgcctg |
202 |
Q |
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|||| ||| |||| ||| |||| ||||||||||||||||| ||||| |||||| || ||||||||||||||| |||||||||| ||| || | || |
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| T |
29678494 |
tcttttggtggtgattcaacttgaggaagatcaatgagtttgatttgaggttgtaagtttaaaactgatttgatgtatgaatctgaaaatggtgtatgtg |
29678395 |
T |
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| Q |
203 |
gaaacttgatgcagaagactgtgatgtaaagatttttgtcatggttggttaaaagttttgcaaattcaagagctgaagctaagtggccaattcctggtgc |
302 |
Q |
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|||| |||||||| | |||||||||| ||| ||| |||| | |||| |||| ||||||||||||||||| | |||| ||||||||||||| |||||| |
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| T |
29678394 |
gaaatttgatgcaaaggactgtgatgaaaatattgttgtgagtgttgattaagagttttgcaaattcaagtgatgaaactaagtggccaatatctggtga |
29678295 |
T |
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| Q |
303 |
aggaatgaagatgagttctgatttcttgttcatctcactc |
342 |
Q |
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||||||||||| ||||||| |||||| | |||||||||| |
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| T |
29678294 |
gggaatgaagataagttctgctttcttctccatctcactc |
29678255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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