View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12800_low_4 (Length: 224)
Name: NF12800_low_4
Description: NF12800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12800_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 392745 - 392562
Alignment:
| Q |
21 |
aagaagacagattttgatattcagattgattggttttattctaaattttaattataggatatgttcaattatgttattgagaattacaaatgttacttcc |
120 |
Q |
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| T |
392745 |
aagaagacagattttgatatttagtttgattggttttattctaaattttaattataggatatgttcaattatgttattgagaattacaaatgttacttcc |
392646 |
T |
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| Q |
121 |
aatttagtcaatgtgtttattgtggttaaattaagtcatgaaacatcaaataatctcagtgatagagatagcatagctgtagac |
204 |
Q |
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| T |
392645 |
aatttagtcaatgtgtttattgtggttaaattaagtcatgaaacatcaaataatctcagtgatagagatagcatagctgtagac |
392562 |
T |
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