View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12801_high_1 (Length: 547)
Name: NF12801_high_1
Description: NF12801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12801_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 14 - 526
Target Start/End: Original strand, 49084100 - 49084611
Alignment:
| Q |
14 |
cacagagaacatggatttatattttatagtcttcggaagcaccaactggtggtaaaatttgtcaagcttcttgagagacagcagatatattggcttgctt |
113 |
Q |
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| T |
49084100 |
cacagagaacatggatttatattttatagtcttcggaagcaccaactggtggtaaaatttgtcaagcttcttgagagacagcagatatattggcttgctt |
49084199 |
T |
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| Q |
114 |
tgtaatcagacaacagcgattgcaagaacactttttagaaagnnnnnnnngaatggggaaggggaagtttcattaataacaatgacactaatgaccatat |
213 |
Q |
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| T |
49084200 |
tgtaatcagacaacagcgattgcaagaatactttttagaaagaaaaaaa-gaatggggaaggggaagttttattaataacaatgacactaatgaccatat |
49084298 |
T |
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| Q |
214 |
tacaattgtccctgggagattcaaactctgtctcgaggttacacagtcaagctctaaccattgagctgtgacaccttttggaagtatgtgaatgcttcaa |
313 |
Q |
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| T |
49084299 |
tacaattgtccctgggatattcaaactctgtctcgaggttacacagtcaagctctaaccattgagctgtgacaccttttggaagtatgtgaatgcttcaa |
49084398 |
T |
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| Q |
314 |
agagacgttaataacaaaatttgaagcataattacaaaaatgcttccaagggatgttaataataaaatttgaatgcctagtagatagtatgtatttattt |
413 |
Q |
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| T |
49084399 |
agagacgttaataacaaaatttgaagcataattacaaaaatgcttccaagggatgttaataataaaatttgaatgcctagtagatagtatgtatttattt |
49084498 |
T |
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| Q |
414 |
tgtatatctgtctctaattgggttttattgtgttgagaactcttgttttgttgataaatcagtatcaataattgcaaacagagtgcatttcaaatgaaca |
513 |
Q |
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| T |
49084499 |
tgtatatctgtctctaattgggttttattgtgttgagaactcttgttttgttgataaatcagtatcaataattgtgtacagagcacatttcaaatgaaca |
49084598 |
T |
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| Q |
514 |
ttacagaatttcc |
526 |
Q |
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| T |
49084599 |
ttacagaatttcc |
49084611 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 39305863 - 39305825
Alignment:
| Q |
185 |
attaataacaatgacactaatgaccatattacaattgtc |
223 |
Q |
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| T |
39305863 |
attaataacaatgacactaatgatcattttacaattgtc |
39305825 |
T |
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