View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12801_high_4 (Length: 282)
Name: NF12801_high_4
Description: NF12801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12801_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 49084120 - 49083851
Alignment:
| Q |
1 |
tataaatccatgttctctgtgttgttttagttcatatgatatcacaatttaggtggctttcaaaactattcttacatgtgtaacagcataaactagacca |
100 |
Q |
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| T |
49084120 |
tataaatccatgttctctgtgttgttttagttcatatgatatcacaatttaggtggctttcaaagctattctt-catgtgtaacagcataaactagaccg |
49084022 |
T |
|
| Q |
101 |
ggaaaggggtaaaaatcatgcacaaacagaattacaaaaatcaaagataactgtcattttagtgttgaataaagtttcttactttgtcagcacaatgaaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49084021 |
ggaaaggtgtaaaaatcatgcacaaacagaattacaaaaatcaaagataactgtcattttagtgttgaataaagtttcttactttgtcagcacaatgaaa |
49083922 |
T |
|
| Q |
201 |
agcttgtataacatacatgtttagttatttgatatcataagaattcaaaaattcataatcaagcagtgaac |
271 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49083921 |
agcttgtatagcatacatgtttagttatttgatatcataagaattcaaaaattcataatcaagtagtgaac |
49083851 |
T |
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