View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12801_low_3 (Length: 378)
Name: NF12801_low_3
Description: NF12801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12801_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1961839 - 1961593
Alignment:
| Q |
1 |
ctagaactcattgcaaagcaaggatttcagatgtattagagaatgaaaagtttgtcatccatgaatttgttgatgaccttaaccacttaatactctacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1961839 |
ctagaactcattgcaaagcaaggatttcagatgtattagagaatgaaaagtttgtcatccatgaatttgttgattaccttaaccacttaatactctacaa |
1961740 |
T |
|
| Q |
101 |
cttttagagacaacattgtcattttgctgtaattttgggatgcatgatagcagtgtaatacctatttaaccgttatcatcaagttgctttgtggattttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1961739 |
cttttagagacaacattgtcattttgctgtaattttgggatgcatgatagcagtgtaatacctatttaaccgttatcatcaagttgctttgtggattttc |
1961640 |
T |
|
| Q |
201 |
caatgtagctagcaatggtattgattataacaattaaatgtgcatct |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1961639 |
caatgtagctagcaatggtattgattataacaattaaatgtgcatct |
1961593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 243 - 356
Target Start/End: Complemental strand, 1961221 - 1961108
Alignment:
| Q |
243 |
catctatcacacaatgctcatttataaatagtatcacaaattgtattacatagaaaatacttgaacttacaagtcacttgctacttgatacaactattta |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1961221 |
catcaatcacacaatgctcatttataaatagtatcacaaattgtattacatagaaaatacttgaacttacaagtcacttgctacttgatacaactattta |
1961122 |
T |
|
| Q |
343 |
ttacaatgtcacct |
356 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1961121 |
ttacaatgtcacct |
1961108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University