View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12801_low_4 (Length: 285)
Name: NF12801_low_4
Description: NF12801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12801_low_4 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 16770284 - 16770554
Alignment:
| Q |
15 |
agagagatggtatctatttgagaccttgtgctcattaggtacccgaaattaattctccttaataagagacccttctattgaagatgatcatagggttttg |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16770284 |
agagagatggtacctatttgagaccttgtgctcattaggtacccgaaattaattctccttaataagagacccttctattgaagatgatcatagggttttg |
16770383 |
T |
|
| Q |
115 |
acaaagtttacacttgttgtgtattgaacnnnnnnnntgacaacaaaattaaacaaagtaagtatataaagatttgatttagagcctatgtgcagagatg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16770384 |
acaaagtttacacttgttgtgtattgaacaagaaaaatgacaacaaaaataaacaaacgaagtatataaagatttgatttagaacctatgtgcagagatg |
16770483 |
T |
|
| Q |
215 |
atccaatcaatccaaatacaacgataatgatagtagnnnnnnntttgtttactcagttcaacctaaattga |
285 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16770484 |
atccaatcaatccaaatacaacggtaatgatagtagaaaaaattttgtttactcagttcaacctaaattga |
16770554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 250
Target Start/End: Original strand, 16777131 - 16777302
Alignment:
| Q |
79 |
agagacccttctattgaagatgatcatagggttttgacaaagtttacacttgttgtgtattgaacnnnnnnnntgacaacaaaattaaacaaagtaagta |
178 |
Q |
| |
|
|||||||||| |||||| ||| || ||||||||||||||||||||||| ||||||||||| ||| ||||||||||| ||| ||| || ||| |
|
|
| T |
16777131 |
agagaccctttcattgaaaatggtcttagggttttgacaaagtttacacgtgttgtgtattcaacaagaaaaatgacaacaaaactaagcaatctacgta |
16777230 |
T |
|
| Q |
179 |
tataaagatttgatttagagcctatgtgcagagatgatccaatcaatccaaatacaacgataatgatagtag |
250 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
16777231 |
aataaatatttgatttagagcctatgtgcatagatgatccaatcaatccaaatacaatggtaatgagagtag |
16777302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 16777037 - 16777097
Alignment:
| Q |
17 |
agagatggtatctatttgagaccttgtgctcattaggtacccgaaattaattctccttaat |
77 |
Q |
| |
|
||||||| || ||||||||||||||||| | ||| |||| ||||||||||||||||||| |
|
|
| T |
16777037 |
agagatgatacctatttgagaccttgtgtttattgggtaattgaaattaattctccttaat |
16777097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 30889104 - 30889072
Alignment:
| Q |
23 |
ggtatctatttgagaccttgtgctcattaggta |
55 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
30889104 |
ggtatctatttgagcccttgtgctcattaggta |
30889072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University