View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12802_high_2 (Length: 234)
Name: NF12802_high_2
Description: NF12802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12802_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 39464507 - 39464712
Alignment:
| Q |
11 |
tagcagaacctgtgtcagaggtttggggaggagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcgga |
110 |
Q |
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|||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39464507 |
tagcggaacctggatcagaggtttggggaagagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcgga |
39464606 |
T |
|
| Q |
111 |
ttctgcggtttgtgggagtttgatgactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39464607 |
ttctgcggtttgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatga |
39464706 |
T |
|
| Q |
211 |
cctaca |
216 |
Q |
| |
|
|||||| |
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|
| T |
39464707 |
cctaca |
39464712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 39470735 - 39470935
Alignment:
| Q |
16 |
gaacctgtgtcagaggtttggggaggagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctg |
115 |
Q |
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||||||| ||||||||| || || |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
39470735 |
gaacctggatcagaggttgggagaacagaaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctg |
39470834 |
T |
|
| Q |
116 |
cggtttgtgggagtttgatgactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctac |
215 |
Q |
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| T |
39470835 |
cagtgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctac |
39470934 |
T |
|
| Q |
216 |
a |
216 |
Q |
| |
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| |
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|
| T |
39470935 |
a |
39470935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 39472195 - 39472031
Alignment:
| Q |
48 |
ttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggtt |
147 |
Q |
| |
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||||||||||||||||| | || ||||| || || |||| |||||||||||||||||||| ||||| | | ||||||| |||||| ||||| | ||| |
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| T |
39472195 |
ttctggaaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagtt |
39472096 |
T |
|
| Q |
148 |
actcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc |
212 |
Q |
| |
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| T |
39472095 |
attcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgacc |
39472031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 212
Target Start/End: Complemental strand, 39486637 - 39486454
Alignment:
| Q |
35 |
ggggaggagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcgg-at-----tctgcggtttgtgggag |
128 |
Q |
| |
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||||| ||||| |||||||||||||||||| | |||||||| || ||||||| |||||| |||||||||||| || |||| ||| ||||||| |
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| T |
39486637 |
ggggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatctgtggtgtgtgggaa |
39486538 |
T |
|
| Q |
129 |
tttgatgactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc |
212 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
39486537 |
tttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgacc |
39486454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 39451166 - 39450998
Alignment:
| Q |
41 |
gagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaa |
140 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| || || |||| ||||||||||| |||||| ||||| | ||||||| |||||| ||||| |
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| T |
39451166 |
gagaaacttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaatttgataactaa |
39451067 |
T |
|
| Q |
141 |
gatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatg |
209 |
Q |
| |
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| ||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| |
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| T |
39451066 |
aacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatg |
39450998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 194
Target Start/End: Complemental strand, 39475678 - 39475519
Alignment:
| Q |
35 |
ggggaggagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgat |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||| || ||||| || || || |||| ||||||||||| |||||| ||||| | ||||||| |||||| |
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| T |
39475678 |
ggggaagagaaacttctggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaatttgat |
39475579 |
T |
|
| Q |
135 |
gactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaag |
194 |
Q |
| |
|
||||| | ||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
39475578 |
aactaaaacagttactcggagacggttatcacgattgattagaagcttcacaaactcaag |
39475519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 39460422 - 39460248
Alignment:
| Q |
35 |
ggggaggagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgat |
134 |
Q |
| |
|
||||| |||||||||||||||||||||||| | ||||||||||| |||||| |||||||||| ||||||||||||| || | ||||||||| || |
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| T |
39460422 |
ggggaagagaaacttctggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtgtatgggagtttcat |
39460323 |
T |
|
| Q |
135 |
gactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatg |
209 |
Q |
| |
|
||||| || || | |||||| || |||||||||||| |||||||||| || |||||||||| ||| ||||||| |
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| T |
39460322 |
gactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatg |
39460248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 39458346 - 39458468
Alignment:
| Q |
90 |
ggatttagtgtagacatcggattctgcggtttgtgggagtttgatgactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaac |
189 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| | ||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
39458346 |
ggatttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaat |
39458445 |
T |
|
| Q |
190 |
tcaagggcagaaactagatgacc |
212 |
Q |
| |
|
|| |||| |||||||||||||| |
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|
| T |
39458446 |
tcgagggtggaaactagatgacc |
39458468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 39480435 - 39480368
Alignment:
| Q |
145 |
gttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacc |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| |
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|
| T |
39480435 |
gttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgacc |
39480368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 43312605 - 43312671
Alignment:
| Q |
130 |
ttgatgactaagatggttactcggagacggttatcacggttgattagaagcttcgcaaactcaaggg |
196 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
43312605 |
ttgatgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaaggg |
43312671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 39454701 - 39454641
Alignment:
| Q |
145 |
gttactcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaacta |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |
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|
| T |
39454701 |
gttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaacta |
39454641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 39483419 - 39483361
Alignment:
| Q |
48 |
ttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacat |
106 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | ||||||| |||||||| |||||||| |
|
|
| T |
39483419 |
ttctggaaggttgattacattaagaaaatcaaagatgggaagggatttagggtagacat |
39483361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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