View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_1 (Length: 241)
Name: NF12803_high_1
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 12267756 - 12267981
Alignment:
| Q |
1 |
atggagagatgttttataaggattcttacatgtttcaaaatcctccattgaataagcagcctagggctaagaatgtttggaaatcatttgttcctccttc |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267756 |
atggtgagatgttttataaggatgcttacatgtttcaaaatcctccattgtataagcagcctagggctaagaatgtttggaaatcatttgttcctccttc |
12267855 |
T |
|
| Q |
101 |
cagttcaatgccatcagatcacacaatgaataaatgacaaagctatagatactcatgctatgaattaaaatctaataacttgaacccttcccactataga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12267856 |
cagttcaatgccatcagatcacgcaatgaataaatgacaaagctatagatactcatactatgaattaaaatctaataacttgaacccttcccactataga |
12267955 |
T |
|
| Q |
201 |
aattaaagaggccttcaaagttgtca |
226 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
12267956 |
aattaaagatgccttcaaagttgtca |
12267981 |
T |
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