View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_10 (Length: 349)
Name: NF12803_high_10
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 29700715 - 29701059
Alignment:
| Q |
5 |
gagtgagatgaacaagaaatcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccat |
104 |
Q |
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| T |
29700715 |
gagtgatataaacaagaattcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccat |
29700814 |
T |
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| Q |
105 |
gacaaaaatctttacatcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattc |
204 |
Q |
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| T |
29700815 |
gacaaaaatctttacatcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattc |
29700914 |
T |
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| Q |
205 |
aactcattgatcttcctgaagtagaaccacctccacaagagctactaaaatctccagaattttacatcttgacttttttggagagtctcatacctcatgt |
304 |
Q |
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| T |
29700915 |
aactgattgatcttcctgaagtagaaccacctccacaagagctactaaaatctccagaattttacatcttgacttttttggagagtctcatacctcatgt |
29701014 |
T |
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| Q |
305 |
caaagcaactatcaaaaccattttatcaaacaatattgttgggtt |
349 |
Q |
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| T |
29701015 |
caaagcaactatcaaaaccattttatcaaacaaagttgttgggtt |
29701059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 29678255 - 29678494
Alignment:
| Q |
5 |
gagtgagatgaacaagaaatcagaactcatcttcattcctgcaccaggaattggccacttagcttcagctcttgaatttgcaaaacttttaaccaaccat |
104 |
Q |
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| T |
29678255 |
gagtgagatggagaagaaagcagaacttatcttcattccctcaccagatattggccacttagtttcatcacttgaatttgcaaaactcttaatcaacact |
29678354 |
T |
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| Q |
105 |
gacaaaaatctttacatcacagtcttctgcatcaagtttccaggcatgccctttgcagattcatatatcaaatcagttttagcctcacaaccacaaattc |
204 |
Q |
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| T |
29678355 |
cacaacaatattttcatcacagtcctttgcatcaaatttccacatacaccattttcagattcatacatcaaatcagttttaaacttacaacctcaaatca |
29678454 |
T |
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| Q |
205 |
aactcattgatcttcctgaagtagaaccacctccacaaga |
244 |
Q |
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| T |
29678455 |
aactcattgatcttcctcaagttgaatcaccaccaaaaga |
29678494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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