View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12803_high_12 (Length: 334)

Name: NF12803_high_12
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12803_high_12
NF12803_high_12
[»] chr7 (31 HSPs)
chr7 (1-310)||(8325320-8325635)
chr7 (126-277)||(15755927-15756078)
chr7 (105-277)||(3172163-3172332)
chr7 (131-231)||(16436408-16436508)
chr7 (1-52)||(4437495-4437546)
chr7 (1-52)||(4444896-4444947)
chr7 (1-51)||(16382178-16382228)
chr7 (3-49)||(33558343-33558389)
chr7 (3-52)||(14939426-14939475)
chr7 (3-52)||(15367019-15367068)
chr7 (3-51)||(34242609-34242657)
chr7 (1-57)||(45148204-45148260)
chr7 (3-52)||(9609889-9609938)
chr7 (3-52)||(9837461-9837510)
chr7 (8-57)||(16207054-16207103)
chr7 (3-52)||(48353987-48354036)
chr7 (1-52)||(31499852-31499903)
chr7 (1-171)||(6461280-6461456)
chr7 (105-162)||(16195656-16195712)
chr7 (135-171)||(13460840-13460876)
chr7 (13-49)||(16918234-16918270)
chr7 (68-165)||(26427125-26427223)
chr7 (13-52)||(17225410-17225449)
chr7 (126-171)||(9128922-9128967)
chr7 (3-52)||(16921420-16921469)
chr7 (126-171)||(39293366-39293411)
chr7 (131-171)||(6210575-6210615)
chr7 (135-171)||(12246474-12246510)
chr7 (135-171)||(14252968-14253004)
chr7 (131-171)||(14278128-14278168)
chr7 (135-171)||(45148083-45148119)
[»] chr8 (21 HSPs)
chr8 (3-277)||(18032750-18033023)
chr8 (133-276)||(23543826-23543970)
chr8 (1-52)||(19333122-19333173)
chr8 (1-52)||(24554077-24554128)
chr8 (3-83)||(26010062-26010139)
chr8 (3-52)||(24266646-24266695)
chr8 (3-52)||(29296543-29296592)
chr8 (3-51)||(15931973-15932021)
chr8 (3-52)||(23227520-23227569)
chr8 (1-52)||(7468891-7468942)
chr8 (131-232)||(31195907-31196008)
chr8 (12-83)||(17265504-17265572)
chr8 (126-174)||(24623307-24623355)
chr8 (13-52)||(17283914-17283953)
chr8 (131-166)||(24906446-24906481)
chr8 (135-171)||(16041171-16041207)
chr8 (135-171)||(16042847-16042883)
chr8 (135-171)||(17500518-17500554)
chr8 (135-171)||(18610760-18610796)
chr8 (135-171)||(25608642-25608678)
chr8 (20-52)||(38637167-38637199)
[»] chr3 (33 HSPs)
chr3 (133-260)||(8853552-8853679)
chr3 (136-313)||(10724833-10725016)
chr3 (1-171)||(27050239-27050409)
chr3 (126-256)||(16220351-16220481)
chr3 (125-276)||(13438448-13438600)
chr3 (1-57)||(17759931-17759987)
chr3 (1-57)||(19061251-19061307)
chr3 (137-245)||(19633441-19633550)
chr3 (1-52)||(17320078-17320129)
chr3 (1-52)||(25105466-25105517)
chr3 (3-52)||(4163687-4163736)
chr3 (3-52)||(18968736-18968785)
chr3 (3-51)||(34558515-34558563)
chr3 (4-51)||(21168221-21168268)
chr3 (1-52)||(43429038-43429089)
chr3 (3-52)||(4147180-4147229)
chr3 (3-52)||(14817199-14817248)
chr3 (13-52)||(12020605-12020644)
chr3 (13-52)||(17203320-17203359)
chr3 (3-52)||(6230136-6230188)
chr3 (105-171)||(2548038-2548105)
chr3 (126-171)||(11401079-11401124)
chr3 (131-171)||(17385351-17385391)
chr3 (131-171)||(54040208-54040248)
chr3 (131-171)||(54049495-54049535)
chr3 (105-167)||(12254393-12254453)
chr3 (131-165)||(6808921-6808955)
chr3 (132-170)||(25606936-25606974)
chr3 (135-172)||(31413915-31413952)
chr3 (12-52)||(15549172-15549212)
chr3 (135-171)||(15551132-15551168)
chr3 (131-171)||(17391840-17391880)
chr3 (131-171)||(25105585-25105625)
[»] scaffold0058 (1 HSPs)
scaffold0058 (3-260)||(79238-79493)
[»] scaffold0333 (1 HSPs)
scaffold0333 (1-86)||(1487-1572)
[»] chr6 (24 HSPs)
chr6 (126-277)||(1560297-1560448)
chr6 (1-174)||(5485835-5486007)
chr6 (1-57)||(4173174-4173230)
chr6 (125-255)||(19728996-19729127)
chr6 (1-57)||(4228783-4228839)
chr6 (1-57)||(29162007-29162063)
chr6 (1-52)||(32350720-32350771)
chr6 (1-57)||(11374348-11374404)
chr6 (1-52)||(15006152-15006203)
chr6 (4-57)||(17375252-17375305)
chr6 (3-52)||(29604207-29604256)
chr6 (68-165)||(24217359-24217457)
chr6 (185-232)||(10973245-10973292)
chr6 (125-174)||(12975025-12975074)
chr6 (3-52)||(18631114-18631163)
chr6 (13-52)||(21621781-21621820)
chr6 (13-52)||(22363687-22363726)
chr6 (13-55)||(25918331-25918373)
chr6 (131-171)||(12466181-12466221)
chr6 (135-171)||(16374881-16374917)
chr6 (135-171)||(19627830-19627866)
chr6 (135-171)||(22595128-22595164)
chr6 (135-171)||(31162523-31162559)
chr6 (135-171)||(35010948-35010984)
[»] scaffold0282 (1 HSPs)
scaffold0282 (1-99)||(20467-20565)
[»] scaffold0205 (2 HSPs)
scaffold0205 (2-83)||(3978-4059)
scaffold0205 (27-165)||(4038-4176)
[»] scaffold0005 (2 HSPs)
scaffold0005 (2-83)||(199542-199623)
scaffold0005 (131-165)||(200826-200860)
[»] chr4 (24 HSPs)
chr4 (2-83)||(14617754-14617835)
chr4 (131-276)||(18667805-18667951)
chr4 (193-276)||(18713540-18713623)
chr4 (188-275)||(5889743-5889832)
chr4 (12-171)||(19076291-19076452)
chr4 (185-277)||(12415209-12415293)
chr4 (1-52)||(12732791-12732842)
chr4 (3-52)||(7187411-7187460)
chr4 (1-50)||(42707399-42707448)
chr4 (3-52)||(18275463-18275512)
chr4 (136-172)||(11774843-11774879)
chr4 (13-52)||(38763427-38763466)
chr4 (131-165)||(14616517-14616551)
chr4 (132-170)||(15676507-15676545)
chr4 (1-50)||(10115869-10115918)
chr4 (131-232)||(20847339-20847440)
chr4 (201-261)||(11774762-11774822)
chr4 (212-256)||(17957534-17957577)
chr4 (131-163)||(17958490-17958522)
chr4 (135-171)||(19699238-19699274)
chr4 (135-171)||(19709823-19709859)
chr4 (201-261)||(21958569-21958629)
chr4 (135-171)||(40902370-40902406)
chr4 (135-171)||(41918420-41918456)
[»] chr2 (15 HSPs)
chr2 (12-99)||(34135778-34135865)
chr2 (2-56)||(20272008-20272062)
chr2 (1-52)||(25132827-25132878)
chr2 (124-232)||(18994703-18994810)
chr2 (3-52)||(19660978-19661027)
chr2 (131-172)||(24533278-24533319)
chr2 (1-49)||(6093474-6093522)
chr2 (3-52)||(24881247-24881296)
chr2 (13-52)||(9782416-9782455)
chr2 (13-52)||(40641786-40641825)
chr2 (132-170)||(24342999-24343037)
chr2 (135-232)||(45619705-45619803)
chr2 (135-171)||(7513687-7513723)
chr2 (135-171)||(22331166-22331202)
chr2 (135-171)||(42180034-42180070)
[»] scaffold0003 (1 HSPs)
scaffold0003 (131-231)||(26038-26138)
[»] chr5 (16 HSPs)
chr5 (1-57)||(21108171-21108227)
chr5 (105-225)||(25340876-25340995)
chr5 (4-52)||(26561292-26561340)
chr5 (3-52)||(29912698-29912747)
chr5 (4-51)||(5622934-5622981)
chr5 (1-52)||(6455319-6455370)
chr5 (125-226)||(19318119-19318220)
chr5 (3-52)||(24082755-24082804)
chr5 (185-232)||(19266820-19266867)
chr5 (131-166)||(33627894-33627929)
chr5 (68-165)||(37278075-37278173)
chr5 (132-170)||(18532420-18532458)
chr5 (132-170)||(22055384-22055422)
chr5 (131-171)||(14343509-14343549)
chr5 (135-171)||(16837014-16837050)
chr5 (135-171)||(34937951-34937987)
[»] chr1 (9 HSPs)
chr1 (1-57)||(33395960-33396016)
chr1 (3-51)||(49998820-49998868)
chr1 (13-52)||(17022213-17022252)
chr1 (1-52)||(40437772-40437823)
chr1 (14-52)||(46144415-46144453)
chr1 (131-172)||(21199241-21199282)
chr1 (135-171)||(20252698-20252734)
chr1 (135-171)||(33395840-33395876)
chr1 (3-43)||(52399275-52399315)
[»] scaffold0024 (1 HSPs)
scaffold0024 (105-232)||(101086-101215)
[»] scaffold0317 (2 HSPs)
scaffold0317 (1-57)||(15392-15448)
scaffold0317 (131-171)||(15512-15552)
[»] scaffold0174 (2 HSPs)
scaffold0174 (1-56)||(21583-21638)
scaffold0174 (3-52)||(1226-1275)
[»] scaffold1204 (1 HSPs)
scaffold1204 (1-51)||(1709-1759)
[»] scaffold0412 (1 HSPs)
scaffold0412 (125-232)||(1624-1730)
[»] scaffold0387 (1 HSPs)
scaffold0387 (3-52)||(2441-2490)
[»] scaffold0357 (1 HSPs)
scaffold0357 (3-52)||(6379-6428)
[»] scaffold0253 (2 HSPs)
scaffold0253 (3-52)||(9996-10045)
scaffold0253 (3-52)||(19421-19470)
[»] scaffold0107 (1 HSPs)
scaffold0107 (3-52)||(12084-12133)
[»] scaffold0006 (1 HSPs)
scaffold0006 (3-52)||(198855-198904)
[»] scaffold0031 (1 HSPs)
scaffold0031 (3-51)||(98657-98705)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-57)||(11226-11282)
[»] scaffold0219 (1 HSPs)
scaffold0219 (3-52)||(25442-25491)
[»] scaffold0047 (1 HSPs)
scaffold0047 (3-52)||(1572-1621)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-57)||(10858-10913)
[»] scaffold0021 (3 HSPs)
scaffold0021 (11-50)||(19281-19320)
scaffold0021 (3-50)||(23538-23585)
scaffold0021 (11-50)||(28857-28896)
[»] scaffold0009 (2 HSPs)
scaffold0009 (13-52)||(68148-68187)
scaffold0009 (126-171)||(256037-256082)
[»] scaffold0508 (1 HSPs)
scaffold0508 (125-174)||(5847-5896)
[»] scaffold0175 (1 HSPs)
scaffold0175 (3-52)||(6657-6706)
[»] scaffold0032 (1 HSPs)
scaffold0032 (3-52)||(106109-106158)
[»] scaffold0028 (1 HSPs)
scaffold0028 (3-52)||(63963-64012)
[»] scaffold0186 (1 HSPs)
scaffold0186 (131-232)||(11471-11573)
[»] scaffold0010 (1 HSPs)
scaffold0010 (14-52)||(29752-29790)
[»] scaffold0123 (1 HSPs)
scaffold0123 (105-171)||(33830-33897)
[»] scaffold1869 (1 HSPs)
scaffold1869 (105-165)||(801-860)
[»] scaffold0396 (1 HSPs)
scaffold0396 (135-171)||(171-207)
[»] scaffold0138 (3 HSPs)
scaffold0138 (135-171)||(26806-26842)
scaffold0138 (135-171)||(27821-27857)
scaffold0138 (135-171)||(39817-39853)
[»] scaffold0115 (1 HSPs)
scaffold0115 (135-171)||(20219-20255)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 8325320 - 8325635
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaa 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  8325320 tagtcatattaagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgggtgtggattcaaa 8325419  T
Q  101 ctgtaaa-ttatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttga 199  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8325420 ctgtaaaattatcttcggactcctat--ggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactagtcgagtcatacttga 8325517  T
Q  200 atatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg-------cgattgtggttgtata 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||    
T  8325518 atatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgcattactcgattctggttgtata 8325617  T
Q  293 cttgtggacttatgatga 310  Q
    ||||||||||||||||||    
T  8325618 cttgtggacttatgatga 8325635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 277
Target Start/End: Original strand, 15755927 - 15756078
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 225  Q
    |||| |||||||| || |||| |||||||||||||||||  || || || ||| |  ||||||||||||||||||||||  |||| ||||||||||||||    
T  15755927 atggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaatatgcaaatcagtgtatatgtgcat 15756026  T
Q  226 tggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 277  Q
    |||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  15756027 tggtgaatgtttggtgattgttgtgaattcttgagaaaagtgaattgtatgc 15756078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 277
Target Start/End: Original strand, 3172163 - 3172332
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatg 204  Q
    ||||||||| |||| ||||||  || |||||||||||||||| |||| || |||||||||| |||||||  ||| |  | | ||||| ||||||| ||||    
T  3172163 aaattatctccggaatcctat--ggtaccacatgcatctagaagagtttaaaacattgcatgcatttatctattcatgagttgagtcgtacttgattatg 3172260  T
Q  205 tgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 277  Q
    |||||  || |||||||||||||||| | ||||||||||| | |||||||||||||||| || ||||||||||    
T  3172261 tgaatttgtatatatgtgcattggtg-acttttggtgatttttgtgaatacttgaacaatgttaattgtatgc 3172332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 16436408 - 16436508
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 230  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  |||    | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  16436408 accacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgattatgtgaatcggtgtatatgtgcattggtg 16436507  T
Q  231 a 231  Q
    |    
T  16436508 a 16436508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4437546 - 4437495
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4437546 tagtcatatcgagtcatatgagaaatgtaaaaggagatgtacttttacatag 4437495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4444947 - 4444896
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4444947 tagtcatatcgagtcatatgagaaatgtaaaaggagatgtacttttacatag 4444896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16382228 - 16382178
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  16382228 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtactcttacata 16382178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 33558389 - 33558343
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca 49  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33558389 gtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttaca 33558343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14939475 - 14939426
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  14939475 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 14939426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 15367068 - 15367019
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15367068 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 15367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 34242609 - 34242657
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34242609 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 34242657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45148260 - 45148204
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||    
T  45148260 tagtcatattaagtcatatgagaaatgtaaaaggaggtgtatttttacatagttgaa 45148204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9609938 - 9609889
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  9609938 gtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatag 9609889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9837510 - 9837461
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  9837510 gtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatag 9837461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 16207103 - 16207054
Alignment:
Q  8 attgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  16207103 attgagtcatatgagaaatgtaaaaggaggtgtaattttacatagttgaa 16207054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 48354036 - 48353987
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  48354036 gtcatatcgagtcatatgagaaatgtaaaaggatatgcacttttacatag 48353987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 31499903 - 31499852
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||| ||||||| ||||||||||||| |||||||||||||||    
T  31499903 tagtcatatcgagttatatgagtaatgtaaaaggaggtgtacttttacatag 31499852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 6461280 - 6461456
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca-----taggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtat 95  Q
    ||||||| ||||||| |||||  |||||||| |||||||||||||||||     | |||||||||  |  | ||||||||||||||||||| | ||| ||    
T  6461280 tagtcatgttgagtcttatgaagaatgtaaatggagatgtacttttacattgctttggtgaaatatgtaagtggaggtgtactcttacgtgggcgtggat 6461379  T
Q  96 tcaa-actg-taaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||| || |  |||||||||||||| ||  || ||| ||||||||||||| || ||||||| |||||| ||| |||||    
T  6461380 tcaatacggcaaaattatcttcggaatcgaat-tggtaccacatgcatcttgaagagtctaaaacatttcatgcattt 6461456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 16195712 - 16195656
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattg 162  Q
    |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||    
T  16195712 aaattatcgtcggaatccta-atggtaccacatgcatctagatgagtctagaatattg 16195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 13460876 - 13460840
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| ||||||||||||||||||||||||    
T  13460876 catgcatctagaagagtctagaacattgcatacattt 13460840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 16918270 - 16918234
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttaca 49  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16918270 gtcatatgagaaatgtaaaaggaggtgtacttttaca 16918234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 26427223 - 26427125
Alignment:
Q  68 ggaggtgtactcttacgtgagtgtgtattcaaactg--taaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 165  Q
    ||||||||||||||| ||| ||||| ||||||  ||   |||||||||||||| ||| || ||| ||||| ||||| |||| ||||||||||||||||||    
T  26427223 ggaggtgtactcttatgtgggtgtggattcaatatggtaaaattatcttcggaatccaat-tggtaccacgtgcatttagaagagtctagaacattgcat 26427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 17225410 - 17225449
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  17225410 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 17225449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 9128922 - 9128967
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||| |||||||||||||||| ||||||||||||||| || |||||    
T  9128922 atggtaccacatgcatctagaagagtctagaacattgtatgcattt 9128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 16921420 - 16921469
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||| ||||||||||||||||  ||| |||||||||||    
T  16921420 gtcatatcgagtcataagagaaatgtaaaaggatgtgttcttttacatag 16921469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 39293366 - 39293411
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||    
T  39293366 atggtaccgcatgcatctagaagagtctagaacattgcatgcattt 39293411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 6210575 - 6210615
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  6210575 accatatgcatctagaagagtctagaacattgcatgcattt 6210615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 12246510 - 12246474
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  12246510 catgcatctagaagagtctagaacattgcatgcattt 12246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 14252968 - 14253004
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  14252968 catgcatctagaagagtctagaacattgcatgcattt 14253004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 14278128 - 14278168
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    ||||||||||| |||| |||||||||||||||||| |||||    
T  14278128 accacatgcatttagaagagtctagaacattgcatgcattt 14278168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 45148119 - 45148083
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  45148119 catgcatctagaagagtctagaacattgcatgcattt 45148083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 277
Target Start/End: Complemental strand, 18033023 - 18032750
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaact 102  Q
    ||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||| |  ||||||||||||||||||||| |||||  |||||||     
T  18033023 gtcatattgagtcatatgaaaaatgtaaaatgaagtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacgtgggtgtgggttcaaacg 18032924  T
Q  103 gt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaat 201  Q
    || |||||||||   || | ||| |||| ||||||||||||||||||||||||||||||||||  ||||| || |||    | ||||| |||||||| ||    
T  18032923 gtaaaattatctcttgaat-cta-atggtaccacatgcatctagatgagtctagaacattgcacgcatttgttaattggtgagtcgagccatacttggat 18032826  T
Q  202 atgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 277  Q
    ||||||||||||||||||||| |||||||||| ||||||||| || || |||||||||| || ||||||| |||||    
T  18032825 atgtgaatcggtgtatatgtgtattggtgaatgtttggtgatcgttgtcaatacttgaaaaaggtgaattatatgc 18032750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 23543826 - 23543970
Alignment:
Q  133 cacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgcattggtga 231  Q
    |||||||||||||| |||||||||||||||||| || ||||| |||    | ||||||| | | |||||||||||||||||||||||||||||||| |||    
T  23543826 cacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtccttatttgaatatgtgaatcggtgtatatgtgcattgttga 23543925  T
Q  232 atttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 276  Q
    | ||||||| ||||| ||| |||||||||||||||||||||||||    
T  23543926 acttttggtaattgttgtggatacttgaacaaagtgaattgtatg 23543970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19333122 - 19333173
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19333122 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19333173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24554077 - 24554128
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24554077 tagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 24554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 26010139 - 26010062
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 83  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||   | |||  ||||||||||||||||||    
T  26010139 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcataagaggaggtgtactcttac 26010062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 24266695 - 24266646
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24266695 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 24266646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29296592 - 29296543
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29296592 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29296543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 15932021 - 15931973
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  15932021 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 15931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 23227520 - 23227569
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  23227520 gtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 23227569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7468942 - 7468891
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  7468942 tagtcatatcgagtcatatgagaaatgtaaaacgaggtatacttttacatag 7468891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 232
Target Start/End: Original strand, 31195907 - 31196008
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggt 229  Q
    |||||||||||||||| |||||||||||||||||| ||||| | | ||| |  | ||| |||||| |||||||||||| | ||| ||| |||||||||||    
T  31195907 accacatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt-tatttgtgcattggt 31196005  T
Q  230 gaa 232  Q
    |||    
T  31196006 gaa 31196008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 17265572 - 17265504
Alignment:
Q  12 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 83  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||   | |||  ||||||||||||||||||    
T  17265572 agtcatatgagaaatgtaaaaagaggtgtacttttacatagttg---ttcataagaggaggtgtactcttac 17265504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 24623355 - 24623307
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacatttatt 174  Q
    |||| |||||||||||||||| |||| ||||||||||||| ||||||||    
T  24623355 atggtaccacatgcatctagaagagtttagaacattgcatgcatttatt 24623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 17283953 - 17283914
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  17283953 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 17283914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 24906481 - 24906446
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcata 166  Q
    |||||||||||| |||||||||||||||||||||||    
T  24906481 accacatgcatcaagatgagtctagaacattgcata 24906446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 16041171 - 16041207
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16041171 catgcatctagaagagtctagaacattgcatgcattt 16041207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 16042847 - 16042883
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16042847 catgcatctagaagagtctagaacattgcatgcattt 16042883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 17500554 - 17500518
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17500554 catgcatctagaagagtctagaacattgcatgcattt 17500518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 18610796 - 18610760
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  18610796 catgcatctagaagagtctagaacattgcatgcattt 18610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 25608678 - 25608642
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  25608678 catgcatctagaagagtctagaacattgcatgcattt 25608642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 38637167 - 38637199
Alignment:
Q  20 gagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||||||||||| |||||||||||||||    
T  38637167 gagaaatgtaaaaggaggtgtacttttacatag 38637199  T

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Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 133 - 260
Target Start/End: Original strand, 8853552 - 8853679
Alignment:
Q  133 cacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 232  Q
    ||||| ||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8853552 cacatacatctagatgagtctagaacattgcatgcatttaataattggtgagtcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 8853651  T
Q  233 tttttggtgattgtcgtgaatacttgaa 260  Q
     ||||||||||||| |||||||||||||    
T  8853652 cttttggtgattgttgtgaatacttgaa 8853679  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 136 - 313
Target Start/End: Complemental strand, 10725016 - 10724833
Alignment:
Q  136 atgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaattt 235  Q
    |||||||||||||||||||||| |||||||  ||||||  |||    | ||||||| ||||||| || ||||||| ||||||||||||||||||||| ||    
T  10725016 atgcatctagatgagtctagaatattgcatgaatttatctattggtgagtcgagtcgtacttgattacgtgaatctgtgtatatgtgcattggtgaa-tt 10724918  T
Q  236 ttggtgattgtcgtgaatacttgaacaaagtgaattgtatg-------cgattgtggttgtatacttgtggacttatgatgatgt 313  Q
    ||||||||||| | ||||||||||| || |||||| |||||       |||||||| ||||||||||||||||||||||||||||    
T  10724917 ttggtgattgttgcgaatacttgaaaaaggtgaatcgtatgcattactcgattgtgtttgtatacttgtggacttatgatgatgt 10724833  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 27050409 - 27050239
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa- 99  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |  ||||| ||||||||||||||| ||||| ||||||     
T  27050409 tagtcatattaagtcatatgagaaatgtaaaaagaggtgtacttttacataggtgaaatacgtaagaggatgtgtactcttacgtgggtgtggattcaat 27050310  T
Q  100 actgtaa-attatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacattt 171  Q
    || |||| ||||| |||||| |||   |||| || |||||||||||||  ||| ||||||||||||| |||||    
T  27050309 acggtaagattattttcggaatcc--aatggtactacatgcatctagaatagtatagaacattgcatgcattt 27050239  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 16220351 - 16220481
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 225  Q
    |||| ||||||||||||||||| |||||| |||||||||| |||||| | |||    | |||||| ||||||| ||||||||||| ||||||| ||||||    
T  16220351 atggtaccacatgcatctagataagtctaaaacattgcatgcatttaataattggtgagtcgagtaatacttggatatgtgaatcagtgtataagtgcat 16220450  T
Q  226 tggtgaatttttggtgattgtcgtgaatact 256  Q
    ||||||| || |||||||||| |||||||||    
T  16220451 tggtgaacttctggtgattgttgtgaatact 16220481  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 276
Target Start/End: Complemental strand, 13438600 - 13438448
Alignment:
Q  125 tatggcaccacatgcatctagatgagtctagaacattgcatacat--ttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtg 222  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||  |||||  ||   || ||||||| ||||||| || |||||| |||||||| |||    
T  13438600 tatggtaccacatgcatctagaagagtctagaacattgcatgcatatttattatttgggtagtcgagtcgtacttgattacgtgaattggtgtatacgtg 13438501  T
Q  223 cattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 276  Q
    ||||||||||  ||||||||  || |||||||||||||||| ||||| ||||||    
T  13438500 cattggtgaa-atttggtgaccgttgtgaatacttgaacaaggtgaactgtatg 13438448  T

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Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 17759931 - 17759987
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17759931 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaa 17759987  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19061251 - 19061307
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19061251 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaa 19061307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 245
Target Start/End: Original strand, 19633441 - 19633550
Alignment:
Q  137 tgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaattt 235  Q
    ||||||||||||||||||||||||||||| ||| | ||| |||    | |||||||| ||||  |||||||||| |||||||||||||||||||||| ||    
T  19633441 tgcatctagatgagtctagaacattgcatgcatatgattcattggtgagtcgagtcaaactttgatatgtgaattggtgtatatgtgcattggtgaaatt 19633540  T
Q  236 ttggtgattg 245  Q
    ||||||||||    
T  19633541 ttggtgattg 19633550  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17320078 - 17320129
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17320078 tagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 17320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25105466 - 25105517
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  25105466 tagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 25105517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 4163687 - 4163736
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  4163687 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 4163736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 18968785 - 18968736
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  18968785 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 18968736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 34558563 - 34558515
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34558563 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 34558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 21168221 - 21168268
Alignment:
Q  4 tcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  21168221 tcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 21168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43429038 - 43429089
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  43429038 tagtcatatcgagtcatatgagaaatgtaaaaggaagtgtacttttacatag 43429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 4147180 - 4147229
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  4147180 gtcatatcgagtcatatgagaaatttaaaaggaggtgtacttttacatag 4147229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 14817199 - 14817248
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  14817199 gtcatatcgagtcatatgagaaatgtaaaaggagatatatttttacatag 14817248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 12020644 - 12020605
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12020644 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 12020605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 17203359 - 17203320
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17203359 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 17203320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 6230136 - 6230188
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggag---atgtacttttacatag 52  Q
    ||||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  6230136 gtcatatcgagtcatatgagaaatgtaaaaggaggtcatgtacttttacatag 6230188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 2548038 - 2548105
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagat--gagtctagaacattgcatacattt 171  Q
    |||||||||||||| ||||| |||| ||||||||||||||||   |||| |||||||||||||||||||    
T  2548038 aaattatcttcggaatccta-atggtaccacatgcatctagagaagagtatagaacattgcatacattt 2548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 11401124 - 11401079
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||    
T  11401124 atggtaccacatgcatctagaagagtctagaacattgcatgcattt 11401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 17385391 - 17385351
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  17385391 accacatgcatctagaagagtctagaacattgcatgcattt 17385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 54040208 - 54040248
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  54040208 accacatgcatctagaagagtctagaacattgcatgcattt 54040248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 54049495 - 54049535
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  54049495 accacatgcatctagaagagtctagaacattgcatgcattt 54049535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 12254393 - 12254453
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatac 167  Q
    ||||||||| |||| ||||||  || ||||||||||| |||| ||||||||||||||||||||    
T  12254393 aaattatctccggaatcctat--ggtaccacatgcatttagaagagtctagaacattgcatac 12254453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 6808955 - 6808921
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcat 165  Q
    |||||||||||||||| ||||||||||||||||||    
T  6808955 accacatgcatctagaagagtctagaacattgcat 6808921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 25606936 - 25606974
Alignment:
Q  132 ccacatgcatctagatgagtctagaacattgcatacatt 170  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  25606936 ccacatgcatctagaggagtctagaacattgcatgcatt 25606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 31413915 - 31413952
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattta 172  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  31413915 catgcatctagaagagtctagaacattgcatgcattta 31413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 15549212 - 15549172
Alignment:
Q  12 agtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  15549212 agtcatatgtgaaatgtaaaaggaggtgtatttttacatag 15549172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 15551132 - 15551168
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  15551132 catgcatctagaagagtctagaacattgcatgcattt 15551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 17391880 - 17391840
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  17391880 accacatgcatctagaagagtcttgaacattgcatgcattt 17391840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 25105585 - 25105625
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  25105585 accacatgcacctagaggagtctagaacattgcatgcattt 25105625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 260
Target Start/End: Complemental strand, 79493 - 79238
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaact 102  Q
    |||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||| | | |||||||  ||||||||||| |||||  |||||||     
T  79493 gtcatattgagtcatatgagaaatgtaaaaggaggtgtactatcacataggtaaaatacgtagaaggaggt-cactcttacgtgggtgtgggttcaaacg 79395  T
Q  103 gt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaat 201  Q
    || ||||| |||||||| ||    |||| |||| |||||||||||||| ||||||||||||||  ||||| || |||    ||| |||||||||||| ||    
T  79394 gtaaaattgtcttcggaatc--gaatggtaccagatgcatctagatgaatctagaacattgcacgcatttgttaattggtgaattgagtcatacttggat 79297  T
Q  202 atgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaa 260  Q
    | ||||||| |||| | |||||||||| |||| |||||||| | | |||||||||||||    
T  79296 acgtgaatcagtgtttctgtgcattggcgaatgtttggtgactattgtgaatacttgaa 79238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1487 - 1572
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtg 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  1487 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacttaagaggaggtgtactcttacgtg 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 126 - 277
Target Start/End: Complemental strand, 1560448 - 1560297
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 225  Q
    |||| |||||||| || |||| |||||||||||||||||  || || || ||| |  ||||||||||||||||||||||  |||| ||||||||||||||    
T  1560448 atggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaatatgcaaatcagtgtatatgtgcat 1560349  T
Q  226 tggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 277  Q
    |||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  1560348 tggtgaatgtttggtgattgttgtgaattcttgagaaaagtgaattgtatgc 1560297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 5485835 - 5486007
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaa 100  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||  ||||||| |||| ||||||  ||||| ||||  |    
T  5485835 tagtcatattgagtcatatgagaaatgtaaaaggatgtgtacttttacataggtcaaatacatgaaaggaggtatacttttacgttggtgtggattcgta 5485934  T
Q  101 ctgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 174  Q
    | || |||||||||| ||| |  |  || | |||||||||| ||||| ||| |||||||||||||| || |||||    
T  5485935 cggtaaaattatcttaggaat--tcaattgtaccacatgcacctagaagagactagaacattgcatgcacttatt 5486007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4173174 - 4173230
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4173174 tagtcatattgagtcatatgagaagtgtaaaaggagatgtacttttacataggtgaa 4173230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 19728996 - 19729127
Alignment:
Q  125 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgc 223  Q
    ||||| |||||||||||||||| |||||||||||||||||| || ||||| |||    | ||||||| | |||||||||||||||||||||| ||||||     
T  19728996 tatggtaccacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtctttacttgaatatgtgaatcggtgtgtatgtgt 19729095  T
Q  224 attggtgaatttttggtgattgtcgtgaatac 255  Q
    |||| | || ||||||||||||| ||| ||||    
T  19729096 attgctaaacttttggtgattgttgtggatac 19729127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4228783 - 4228839
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4228783 tagtcatattgagtcatatgagaagtgtaaaaggaggtgtacttttacataggtgaa 4228839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29162007 - 29162063
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  29162007 tagtcatattgagtcatatgagaaatgtaaaagaagatgtacttttacatagttgaa 29162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32350771 - 32350720
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32350771 tagtcatattgagtcatatgagaaatgtaaaaggagatgcacttttacatag 32350720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11374348 - 11374404
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  11374348 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtccttttacatagttgaa 11374404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15006152 - 15006203
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15006152 tagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 15006203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 17375252 - 17375305
Alignment:
Q  4 tcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  17375252 tcatattgagtcatatgagaaatgtaaaaggaggtctacttttacatagttgaa 17375305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29604256 - 29604207
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29604256 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29604207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 24217457 - 24217359
Alignment:
Q  68 ggaggtgtactcttacgtgagtgtgtattcaa-actgtaaa-ttatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 165  Q
    ||||||||||||||||||||||||| ||| || |||||||| ||||||   || |||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  24217457 ggaggtgtactcttacgtgagtgtggatttaatactgtaaaattatctatagaatcctat-tggtaccacatgcatttagaagagtctagaacattgcat 24217359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 10973292 - 10973245
Alignment:
Q  185 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 232  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  10973292 tcgagtcatacttgattatgtgaattggtgtatacgtgcattggtgaa 10973245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 12975074 - 12975025
Alignment:
Q  125 tatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 174  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  12975074 tatggtaccacatgcatctagaaatgtctagaacattgcatacatttatt 12975025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 18631114 - 18631163
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||| ||||||||||||||| ||| |||||||||||    
T  18631114 gtcatatcgagtcatatgtgaaatgtaaaaggaggtgttcttttacatag 18631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 21621820 - 21621781
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  21621820 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 21621781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 22363687 - 22363726
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  22363687 gtcatatgaaaaatgtaaaaggagatgttcttttacatag 22363726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 25918373 - 25918331
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacataggtg 55  Q
    ||||| || ||||||||||||||| ||||||||||||||||||    
T  25918373 gtcatttgtgaaatgtaaaaggaggtgtacttttacataggtg 25918331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 12466181 - 12466221
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  12466181 accacatacatctagaagagtctagaacattgcatgcattt 12466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 16374917 - 16374881
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16374917 catgcatctagaagagtctagaacattgcatgcattt 16374881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 19627866 - 19627830
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19627866 catgcatctagaagagtctagaacattgcatgcattt 19627830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 22595128 - 22595164
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  22595128 catgcatctagaagagtctagaacattgcatgcattt 22595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 31162523 - 31162559
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  31162523 catgcatctagaagagtctagaacattgcatgcattt 31162559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 35010948 - 35010984
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  35010948 catgcatctagaagagtctagaacattgcatgcattt 35010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 20467 - 20565
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa 99  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||| | |||||||||||| ||||| ||||||    
T  20467 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggagttttactcttacgtgggtgtggattcaa 20565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 3978 - 4059
Alignment:
Q  2 agtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 83  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||||||    
T  3978 agtcatattaagtcatatgagaaatgtaaaaggatgtgtacttttacataggtgaaatacgtaagaggaggtgtactcttac 4059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 4038 - 4176
Alignment:
Q  27 gtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaactgt-aaattatcttcggactcctat 125  Q
    |||| ||||| |||||| ||||||||||||||||| |  ||||| |||||||||||||||  |||| ||||| || || ||||||||  |  | ||| |     
T  4038 gtaagaggaggtgtactcttacataggtgaaatacgtaagaggatgtgtactcttacgtggatgtggattcatacggtaaaattatccccataatcc-aa 4136  T
Q  126 atggcaccacatgcatctagatgagtctagaacattgcat 165  Q
    |||| |||||||||||||||| |||||||||| |||||||    
T  4137 atggtaccacatgcatctagaagagtctagaatattgcat 4176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 199542 - 199623
Alignment:
Q  2 agtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 83  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| ||||||    
T  199542 agtcatattgagtcatatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttac 199623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 200826 - 200860
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcat 165  Q
    |||||||||||||||| ||||||||||||||||||    
T  200826 accacatgcatctagaggagtctagaacattgcat 200860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 14617835 - 14617754
Alignment:
Q  2 agtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 83  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| ||||||    
T  14617835 agtcatattgagtcatatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttac 14617754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 276
Target Start/End: Original strand, 18667805 - 18667951
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgcattggt 229  Q
    |||||||||||||||| |||| |||||||||||||  | |||||  ||    | ||||||| | ||||||||||||||||| || |||||||||||||||    
T  18667805 accacatgcatctagaagagtatagaacattgcatgtacttattacttggtgagtcgagtccttacttgaatatgtgaatcagtatatatgtgcattggt 18667904  T
Q  230 gaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 276  Q
    ||| ||||||||||||| ||||||||||| ||||  |||||| ||||    
T  18667905 gaacttttggtgattgttgtgaatacttgcacaagatgaattatatg 18667951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 193 - 276
Target Start/End: Original strand, 18713540 - 18713623
Alignment:
Q  193 tacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 276  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||  |||||| ||||    
T  18713540 tacttggatatgtgaatcggtatatatgtgcattggtgaacttttggtgattgttgtgaatacttgcacaagatgaattatatg 18713623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 5889832 - 5889743
Alignment:
Q  188 agtcatacttgaatat--gtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtat 275  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| || |||||| ||||    
T  5889832 agtcatacttgaatatatgtgaatcagtgtatatgtgcattggtgaaattttggtgatcgtcgtgaatactcgaaaaaggtgaatagtat 5889743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 19076452 - 19076291
Alignment:
Q  12 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa-actgtaa-att 109  Q
    ||||||||||| ||||||||||||| |||| |||||| || ||||||||| |  |||||| |||||||||| ||| ||||| |||||| || |||| |||    
T  19076452 agtcatatgaggaatgtaaaaggaggtgtatttttacgtatgtgaaatacgtaagaggagatgtactcttatgtgggtgtggattcaatacagtaatatt 19076353  T
Q  110 atcttcggactcctatatggcaccacatgcatct--agatgagtctagaacattgcatacattt 171  Q
    |||| |||| |||   |||| |||||||||||||  |||  ||||||||||||||||| |||||    
T  19076352 atctccggaatcc--aatggtaccacatgcatctaaagaaaagtctagaacattgcatgcattt 19076291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 277
Target Start/End: Complemental strand, 12415293 - 12415209
Alignment:
Q  185 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 277  Q
    |||||||||||||| |||||||||||||||||||||||        |||||||||||||||| | ||||||| ||| ||||||||||||||||    
T  12415293 tcgagtcatacttggatatgtgaatcggtgtatatgtg--------aatttttggtgattgttgcgaatactcgaaaaaagtgaattgtatgc 12415209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12732842 - 12732791
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  12732842 tagtcatatcgagtcatatgagaaatgtaaaagaaggtgtacttttacatag 12732791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 7187411 - 7187460
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  7187411 gtcatatcgagtcatatgtgaaatggaaaaggagatgtacttttacatag 7187460  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 42707448 - 42707399
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 50  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  42707448 tagtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacat 42707399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 18275512 - 18275463
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| ||||||||||| ||||| |||||||| |||||||||||||||    
T  18275512 gtcatatcgagtcatatgataaatggaaaaggaggtgtacttttacatag 18275463  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 11774879 - 11774843
Alignment:
Q  136 atgcatctagatgagtctagaacattgcatacattta 172  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11774879 atgcatctagatgagtctagaacattgcatgcattta 11774843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 38763466 - 38763427
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  38763466 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 38763427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 14616551 - 14616517
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcat 165  Q
    |||||||||||||||| ||||||||||||||||||    
T  14616551 accacatgcatctagaggagtctagaacattgcat 14616517  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 15676507 - 15676545
Alignment:
Q  132 ccacatgcatctagatgagtctagaacattgcatacatt 170  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  15676507 ccacatgcatctagaggagtctagaacattgcatgcatt 15676545  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10115869 - 10115918
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 50  Q
    ||||||||||||||| |||||  |||||||| |||| |||||||||||||    
T  10115869 tagtcatattgagtcttatgaagaatgtaaatggaggtgtacttttacat 10115918  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 20847440 - 20847339
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 230  Q
    |||||||| ||||||| |||||||||||||||||| |||||  | |||    || || ||||||||||| |||||| || ||||  ||||||||||| ||    
T  20847440 accacatgtatctagaagagtctagaacattgcatgcatttgatcattggtgaaacgtgtcatacttgactatgtgtattggtgattatgtgcattgatg 20847341  T
Q  231 aa 232  Q
    ||    
T  20847340 aa 20847339  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 11774822 - 11774762
Alignment:
Q  201 tatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaac 261  Q
    |||||||||| ||||||||||||||||||| | ||||| ||||  | ||||||| ||||||    
T  11774822 tatgtgaatcagtgtatatgtgcattggtggacttttgttgatgattgtgaatatttgaac 11774762  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 17957577 - 17957534
Alignment:
Q  212 gtgtatatgtgcattggtgaatttttggtgattgtcgtgaatact 256  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||    
T  17957577 gtgtgtatgtgcattggtgaa-ttttggtgattgttgtgaatact 17957534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 17958522 - 17958490
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgc 163  Q
    |||||||||||||||| ||||||||||||||||    
T  17958522 accacatgcatctagacgagtctagaacattgc 17958490  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 19699238 - 19699274
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19699238 catgcatctagaagagtctagaacattgcatgcattt 19699274  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 19709823 - 19709859
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19709823 catgcatctagaagagtctagaacattgcatgcattt 19709859  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 21958629 - 21958569
Alignment:
Q  201 tatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaac 261  Q
    ||||||||| |||||| ||||||||||||| | ||||| |||| || ||||||| ||||||    
T  21958629 tatgtgaattggtgtaaatgtgcattggtggacttttgttgatggttgtgaatatttgaac 21958569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 40902370 - 40902406
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40902370 catgcatctagaagagtctagaacattgcatgcattt 40902406  T

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Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 41918420 - 41918456
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  41918420 catgcatctagaagagtctagaacattgcatgcattt 41918456  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 34135778 - 34135865
Alignment:
Q  12 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa 99  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||| || ||||| ||||||    
T  34135778 agtcatatgaggaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacttgggtgtggattcaa 34135865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 20272062 - 20272008
Alignment:
Q  2 agtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtga 56  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20272062 agtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtga 20272008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25132878 - 25132827
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  25132878 tagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 25132827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 18994810 - 18994703
Alignment:
Q  124 atatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaact-aatcgagtcatacttgaatatgtgaatcggtgtatatgtg 222  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||   |||||   | | || |||||||||||| ||| ||||| |||||||| |||    
T  18994810 atatggtaccacatgcatctagaagagtctagagcattgcatacatt--gtgatttggtgagtcaagtcatacttgattatatgaattggtgtatacgtg 18994713  T
Q  223 cattggtgaa 232  Q
    ||||||||||    
T  18994712 cattggtgaa 18994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 19661027 - 19660978
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  19661027 gtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 19660978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 24533278 - 24533319
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattta 172  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24533278 accacatgcatctagatgagtctagaacattgcatccattta 24533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6093522 - 6093474
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca 49  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||    
T  6093522 tagtcatattgagtcatatgagaaatgtaaaagggtttgtacttttaca 6093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 24881296 - 24881247
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  24881296 gtcatatcgggtcatttgagaaatgtaaaaggaggtgtacttttacatag 24881247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 9782416 - 9782455
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  9782416 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 9782455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 40641786 - 40641825
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  40641786 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 40641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 24342999 - 24343037
Alignment:
Q  132 ccacatgcatctagatgagtctagaacattgcatacatt 170  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  24342999 ccacatgcatctagaggagtctagaacattgcatgcatt 24343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 45619705 - 45619803
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 232  Q
    |||||||||||| |||||||||||||||||| ||||| | || || |  ||| | |||||| ||||||| |||| | |||| || ||||||||||||||    
T  45619705 catgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataattgaatacgtgacttggtgaatttgtgcattggtgaa 45619803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 7513687 - 7513723
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  7513687 catgcatctagaagagtctagaacattgcatgcattt 7513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 22331202 - 22331166
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  22331202 catgcatctagaagagtctagaacattgcatgcattt 22331166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 42180034 - 42180070
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  42180034 catgcatctagaagagtctagaacattgcatgcattt 42180070  T

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Target: scaffold0003 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 231
Target Start/End: Original strand, 26038 - 26138
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 230  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  |||    | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  26038 accacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgattatgtgaatcggtgtatatgtgcattggtg 26137  T
Q  231 a 231  Q
    |    
T  26138 a 26138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21108227 - 21108171
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  21108227 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 21108171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 25340995 - 25340876
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatg 204  Q
    |||||||||  ||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |||    | |||||||||||||| |||||    
T  25340995 aaattatctctggaatccta-atggtaccacatgcatctagatgagtctagaacattgcatgcatttgttaattggtgagtcgagtcatacttggatatg 25340897  T
Q  205 tgaatcggtgtatatgtgcat 225  Q
    | ||| ||||| |||||||||    
T  25340896 tcaattggtgtgtatgtgcat 25340876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 26561292 - 26561340
Alignment:
Q  4 tcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26561292 tcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 26561340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29912747 - 29912698
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29912747 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29912698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 5622934 - 5622981
Alignment:
Q  4 tcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  5622934 tcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 5622981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6455370 - 6455319
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  6455370 tagtcataacgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 6455319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 19318119 - 19318220
Alignment:
Q  125 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgca 224  Q
    ||||| |||||||||||||||| |||||||||||||| ||| ||||||||  ||    | ||||||| ||||||| |||||| || |||||||| |||||    
T  19318119 tatggtaccacatgcatctagaagagtctagaacattacatgcatttattatttggtgagtcgagtcgtacttgattatgtgtattggtgtatacgtgca 19318218  T
Q  225 tt 226  Q
    ||    
T  19318219 tt 19318220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 24082804 - 24082755
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  24082804 gtcatatcgagtcgtatgagaaatgtaaaaggaggtgtacttttacatag 24082755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 232
Target Start/End: Complemental strand, 19266867 - 19266820
Alignment:
Q  185 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 232  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||    
T  19266867 tcgagtcatacttgattatgtgaattggtgtatacgtgctttggtgaa 19266820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 33627894 - 33627929
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcata 166  Q
    |||||||||||||| |||||||||||||||||||||    
T  33627894 accacatgcatctacatgagtctagaacattgcata 33627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 37278173 - 37278075
Alignment:
Q  68 ggaggtgtactcttacgtgagtgtgtattcaa-actgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 165  Q
    ||||||||||||||||||| ||||| ||||||  |||| ||||||||| |||| ||| || ||| ||||| || ||||| | ||||||||||||||||||    
T  37278173 ggaggtgtactcttacgtgggtgtggattcaatgctgtaaaattatctccggaatccaat-tggtaccacgtgtatctaaaagagtctagaacattgcat 37278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 18532420 - 18532458
Alignment:
Q  132 ccacatgcatctagatgagtctagaacattgcatacatt 170  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18532420 ccacatgcatctagaggagtctagaacattgcatgcatt 18532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 22055384 - 22055422
Alignment:
Q  132 ccacatgcatctagatgagtctagaacattgcatacatt 170  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  22055384 ccacatgcatctagaggagtctagaacattgcatgcatt 22055422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 14343509 - 14343549
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  14343509 accacatgcatctagaagagtctggaacattgcatgcattt 14343549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 16837014 - 16837050
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16837014 catgcatctagaagagtctagaacattgcatgcattt 16837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 34937987 - 34937951
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  34937987 catgcatctagaagagtctagaacattgcatgcattt 34937951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33396016 - 33395960
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  33396016 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 33395960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 49998820 - 49998868
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||| |||||||||||||||||||||||||| || |||||||||||    
T  49998820 gtcatatcgagtcatatgagaaatgtaaaaggaggtgcacttttacata 49998868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 17022252 - 17022213
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17022252 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 17022213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40437772 - 40437823
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||| |||| ||||||||||||||||||||  |||||||||||||||    
T  40437772 tagtcatatcgagtaatatgagaaatgtaaaaggatgtgtacttttacatag 40437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 46144453 - 46144415
Alignment:
Q  14 tcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  46144453 tcatatgagaaatgtaaaaggaggtgtacttttacatag 46144415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 21199241 - 21199282
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattta 172  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  21199241 accacatgcatctagacgagtctagaacattgcatgcattta 21199282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 20252734 - 20252698
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  20252734 catgcatctagaagagtctagaacattgcatgcattt 20252698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 33395876 - 33395840
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  33395876 catgcatctagaagagtctagaacattgcatgcattt 33395840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 52399315 - 52399275
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtact 43  Q
    ||||||| ||||| |||||||||||||||||||| ||||||    
T  52399315 gtcatatcgagtcgtatgagaaatgtaaaaggaggtgtact 52399275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 101086 - 101215
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatac--ttgaata 202  Q
    ||||||||| | || ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||    | |||||||||||  ||| |||    
T  101086 aaattatctcctgaatccta-atggtaccacatgcatctagatgagtctagaacattgcatgcatttattaattggtaagtcgagtcatacttttggata 101184  T
Q  203 tgtgaa-tcggtgtatatgtgcattggtgaa 232  Q
    |||||| | ||||| ||||||||||||||||    
T  101185 tgtgaatttggtgtgtatgtgcattggtgaa 101215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15392 - 15448
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  15392 tagtcatattgagccatatgagaaatgtaaaagggggtgtacttttacataggtgaa 15448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 15512 - 15552
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  15512 accacatgcatctagaagagtctagaacattgcatgcattt 15552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21583 - 21638
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtga 56  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  21583 tagtcatattgagtcatatgagaaatctaaaaggaggtgtaattttacataggtga 21638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 1275 - 1226
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  1275 gtcatatctagtcatatgagaaatgtaaaaggaggtttacttttacatag 1226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 1709 - 1759
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1709 tagtcatattgagtcatatgagaaatgtaaaaggaggtgtactcttacata 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 1730 - 1624
Alignment:
Q  125 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaa-tcgagtcatacttgaatatgtgaatcggtgtatatgtgc 223  Q
    ||||| |||||||||||||||| |||||| ||||||| ||||||||   ||||| | | | | ||||||||| ||| ||||||||| |||||||||||||    
T  1730 tatggtaccacatgcatctagaagagtcttgaacatttcatacattg--tgattcagtgagttgagtcatacatgactatgtgaattggtgtatatgtgc 1633  T
Q  224 attggtgaa 232  Q
    |||||||||    
T  1632 attggtgaa 1624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 2441 - 2490
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2441 gtcatatcgagtcatatgagaaatttaaaaggagatgtacttttacatag 2490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 6428 - 6379
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  6428 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 6379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 10045 - 9996
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10045 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 9996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 19470 - 19421
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  19470 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 12133 - 12084
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  12133 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 12084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 198855 - 198904
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  198855 gtcatatcgagtcatatgagaaatataaaaggagatgtacttttacatag 198904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 98657 - 98705
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 51  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  98657 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 98705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11282 - 11226
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||    
T  11282 tagtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatagttgaa 11226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 25442 - 25491
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  25442 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtaattttacatag 25491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 1572 - 1621
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  1572 gtcatatcgagtcatatgagaaatgtaaaagcaggtgtacttttacatag 1621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10858 - 10913
Alignment:
Q  1 tagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 57  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||    
T  10858 tagtcatattgagtcatatgag-aatgtaaaaggaggtgtactttaacatagttgaa 10913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 19281 - 19320
Alignment:
Q  11 gagtcatatgagaaatgtaaaaggagatgtacttttacat 50  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  19281 gagtcatatgagaaatgtaaaaggaggtgtacttttacat 19320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 23538 - 23585
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 50  Q
    ||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  23538 gtcatatcgagtcatatgagaaatgtaaaaggaggtgtaattttacat 23585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 28857 - 28896
Alignment:
Q  11 gagtcatatgagaaatgtaaaaggagatgtacttttacat 50  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28857 gagtcatatgagaaatgtaaaaggaggtgtacttttacat 28896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 68187 - 68148
Alignment:
Q  13 gtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  68187 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 68148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 256037 - 256082
Alignment:
Q  126 atggcaccacatgcatctagatgagtctagaacattgcatacattt 171  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||    
T  256037 atggtaccgcatgcatctagaagagtctagaacattgcatgcattt 256082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 5896 - 5847
Alignment:
Q  125 tatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 174  Q
    ||||| |||||||||||||||| | |||||||||||||||| ||||||||    
T  5896 tatggtaccacatgcatctagaagggtctagaacattgcatgcatttatt 5847  T

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Target: scaffold0175 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 6657 - 6706
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||| ||||||||||||||| |||| ||||||||||    
T  6657 gtcatatcgagtcatatgtgaaatgtaaaaggaggtgtatttttacatag 6706  T

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Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 106109 - 106158
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||| |||||||||| ||||||||||||||| |||||||| ||||||    
T  106109 gtcatatcgagtcatatgtgaaatgtaaaaggaggtgtactttaacatag 106158  T

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Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 63963 - 64012
Alignment:
Q  3 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    |||||||  ||||||||| ||||||||||||||| |||||||||||||||    
T  63963 gtcatatcaagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 64012  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 11573 - 11471
Alignment:
Q  131 accacatgcatctagatgagtctagaacattgcatacatttattgatt-aactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggt 229  Q
    |||||||||||||||| |||||||||| ||||||| |||||  | |||     || || ||||||||||| ||||||| | |||| ||||||||||||||    
T  11573 accacatgcatctagaagagtctagaatattgcatgcatttgataattggtgaaaacgtgtcatacttgactatgtgacttggtgaatatgtgcattggt 11474  T
Q  230 gaa 232  Q
    |||    
T  11473 gaa 11471  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 29790 - 29752
Alignment:
Q  14 tcatatgagaaatgtaaaaggagatgtacttttacatag 52  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29790 tcatatgagaaatgtaaaatgaggtgtacttttacatag 29752  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 33897 - 33830
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagat--gagtctagaacattgcatacattt 171  Q
    ||||||||| |||| ||||| |||| ||||||||||||||||   |||||||||||||||||| |||||    
T  33897 aaattatctccggaatccta-atggtaccacatgcatctagagaagagtctagaacattgcatgcattt 33830  T

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Target: scaffold1869 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 860 - 801
Alignment:
Q  105 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 165  Q
    |||||||||||||| |||||| ||  |||| ||||||||||| |||| |||||||||||||    
T  860 aaattatcttcggaatcctat-tgctaccatatgcatctagaagagtttagaacattgcat 801  T

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Target: scaffold0396 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 171 - 207
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  171 catgcatctagaagagtctagaacattgcatgcattt 207  T

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Target: scaffold0138 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 26842 - 26806
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  26842 catgcatctagaagagtctagaacattgcatgcattt 26806  T

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Target: scaffold0138; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 27857 - 27821
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  27857 catgcatctagaagagtctagaacattgcatgcattt 27821  T

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Target: scaffold0138; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 39853 - 39817
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  39853 catgcatctagaagagtctagaacattgcatgcattt 39817  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 20255 - 20219
Alignment:
Q  135 catgcatctagatgagtctagaacattgcatacattt 171  Q
    |||||||||||| |||||||||||||||||| |||||    
T  20255 catgcatctagaagagtctagaacattgcatgcattt 20219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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