View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12803_high_15 (Length: 314)

Name: NF12803_high_15
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12803_high_15
NF12803_high_15
[»] chr7 (7 HSPs)
chr7 (57-314)||(10206659-10206916)
chr7 (57-113)||(9456941-9456997)
chr7 (57-107)||(48644159-48644209)
chr7 (57-115)||(18535662-18535721)
chr7 (15-53)||(45623332-45623370)
chr7 (57-102)||(27258279-27258324)
chr7 (57-102)||(39703138-39703183)
[»] chr3 (15 HSPs)
chr3 (79-314)||(48119569-48119802)
chr3 (57-118)||(9767929-9767990)
chr3 (57-118)||(46124028-46124089)
chr3 (57-115)||(11028072-11028129)
chr3 (57-115)||(15212737-15212795)
chr3 (57-115)||(15251956-15252014)
chr3 (57-115)||(22155376-22155434)
chr3 (84-151)||(1136157-1136224)
chr3 (56-118)||(53157278-53157340)
chr3 (57-114)||(21972645-21972702)
chr3 (57-114)||(21995076-21995133)
chr3 (57-114)||(41935243-41935300)
chr3 (57-115)||(6079879-6079937)
chr3 (57-119)||(24552581-24552643)
chr3 (57-119)||(24558720-24558782)
[»] chr1 (8 HSPs)
chr1 (57-153)||(41476035-41476131)
chr1 (205-314)||(41475851-41475956)
chr1 (57-115)||(15723291-15723349)
chr1 (59-114)||(2248044-2248099)
chr1 (57-115)||(44201672-44201730)
chr1 (57-118)||(46123005-46123066)
chr1 (56-115)||(19193807-19193866)
chr1 (13-53)||(15847409-15847449)
[»] scaffold0553 (1 HSPs)
scaffold0553 (57-119)||(6549-6611)
[»] chr6 (21 HSPs)
chr6 (14-117)||(8848035-8848140)
chr6 (57-115)||(23094608-23094666)
chr6 (57-118)||(19382994-19383055)
chr6 (9-53)||(14606006-14606050)
chr6 (56-115)||(14603975-14604034)
chr6 (57-115)||(19214781-19214839)
chr6 (57-115)||(21393426-21393484)
chr6 (57-118)||(2666141-2666202)
chr6 (57-114)||(17724581-17724638)
chr6 (57-114)||(23160780-23160837)
chr6 (57-113)||(19002769-19002825)
chr6 (57-115)||(15907093-15907151)
chr6 (57-115)||(32616898-32616956)
chr6 (14-53)||(23097045-23097084)
chr6 (57-115)||(8909966-8910024)
chr6 (57-115)||(21683171-21683229)
chr6 (57-115)||(31877213-31877271)
chr6 (58-115)||(14603728-14603785)
chr6 (57-114)||(17102635-17102692)
chr6 (59-115)||(13548340-13548396)
chr6 (57-113)||(18691735-18691791)
[»] chr2 (8 HSPs)
chr2 (57-119)||(2707131-2707193)
chr2 (57-119)||(31898581-31898643)
chr2 (57-114)||(45073808-45073861)
chr2 (57-115)||(24863912-24863970)
chr2 (57-115)||(25417080-25417138)
chr2 (75-119)||(39907536-39907580)
chr2 (57-115)||(24079509-24079567)
chr2 (75-119)||(28384646-28384690)
[»] scaffold0072 (1 HSPs)
scaffold0072 (57-118)||(46284-46345)
[»] chr8 (9 HSPs)
chr8 (9-53)||(44970835-44970879)
chr8 (57-113)||(23120522-23120578)
chr8 (57-118)||(508262-508323)
chr8 (57-148)||(22216423-22216514)
chr8 (57-115)||(8223730-8223788)
chr8 (63-113)||(21349404-21349454)
chr8 (84-117)||(23126932-23126965)
chr8 (57-114)||(45537326-45537383)
chr8 (57-113)||(16047108-16047164)
[»] chr5 (10 HSPs)
chr5 (57-116)||(22362557-22362616)
chr5 (9-53)||(35332605-35332649)
chr5 (57-118)||(21112711-21112772)
chr5 (57-115)||(42883073-42883131)
chr5 (63-116)||(27032680-27032733)
chr5 (57-114)||(38925437-38925494)
chr5 (85-163)||(28256327-28256405)
chr5 (15-53)||(32723804-32723842)
chr5 (57-102)||(29391378-29391423)
chr5 (57-114)||(35328810-35328867)
[»] scaffold0337 (1 HSPs)
scaffold0337 (57-115)||(789-847)
[»] scaffold0281 (1 HSPs)
scaffold0281 (60-119)||(4583-4642)
[»] scaffold0077 (1 HSPs)
scaffold0077 (57-115)||(52538-52596)
[»] chr4 (7 HSPs)
chr4 (57-114)||(43593847-43593904)
chr4 (57-118)||(35577352-35577413)
chr4 (83-148)||(51033336-51033401)
chr4 (57-115)||(16612222-16612280)
chr4 (57-115)||(18811327-18811385)
chr4 (57-115)||(50377326-50377384)
chr4 (57-113)||(13757135-13757191)
[»] scaffold0164 (2 HSPs)
scaffold0164 (58-109)||(5207-5257)
scaffold0164 (14-53)||(33866-33905)
[»] scaffold0214 (2 HSPs)
scaffold0214 (15-53)||(11573-11611)
scaffold0214 (15-53)||(25873-25911)
[»] scaffold0179 (1 HSPs)
scaffold0179 (57-119)||(28438-28500)
[»] scaffold0039 (1 HSPs)
scaffold0039 (57-115)||(102232-102290)
[»] scaffold0086 (1 HSPs)
scaffold0086 (78-119)||(42469-42510)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 57 - 314
Target Start/End: Original strand, 10206659 - 10206916
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatt 156  Q
    |||||||||||||| |  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10206659 actagcgtccagaccggcacttccgtgcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatt 10206758  T
Q  157 tgaatttaactatttacaaattacacaattgatagggatnnnnnnnnntgataaactaaaagatgtaaatatatgctacgtgtttaggttattagccaaa 256  Q
    |||||||||||||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  10206759 tgaatttaactatttacaaattacacaattgataggaataaaaaaaaatgataaactaaaagatgtaaatatatgttaagtgtttaggttattagccaaa 10206858  T
Q  257 aacttgttggtacaacatccaaaataaactcgatcgtttgttcaaattatgaacataa 314  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  10206859 aacttgttcgtacaacatccaaaataaactcgatcgtttgtacaaattatgtacataa 10206916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 9456941 - 9456997
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||| | ||||||||    
T  9456941 actagcgtctagacggacactcccgtacccgtctgtccgctttttctattgcgctaa 9456997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 48644209 - 48644159
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactg 107  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||| ||||    
T  48644209 actagcgtccagacggacactctcgtgcccgtctgtccgctttttctactg 48644159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 18535662 - 18535721
Alignment:
Q  57 actagcgtccagacggatactcccgttcccg-tctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| |||| |||||||||| |||| ||||||||||||    
T  18535662 actagcgtccagacgggcactcccgtgcccggtctgtccgctctttctactgcgctaacg 18535721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 45623370 - 45623332
Alignment:
Q  15 aaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  45623370 aaaataggctacaccaaaagaaagtattgcctttattaa 45623332  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 27258279 - 27258324
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttc 102  Q
    |||||| |||||||||| |||| ||| |||||||||||||||||||    
T  27258279 actagcatccagacggacactctcgtgcccgtctgtccgctttttc 27258324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 39703183 - 39703138
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttc 102  Q
    ||||||||||||||||  |||||||| |||||||||||||| ||||    
T  39703183 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttc 39703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 79 - 314
Target Start/End: Complemental strand, 48119802 - 48119569
Alignment:
Q  79 ccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatttgaatttaactatttacaaatt 178  Q
    |||| ||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||| |||||| ||| |||||| ||||||||||| | |||    
T  48119802 ccgtgcccgtctgtccgctttttctattgcgctaatgtatgcgttgatttgattatttttctttgtataagattggtttgaagttaactatttatagatt 48119703  T
Q  179 acacaattgatagggatnnnnnnnnn-tgataaactaaaagatgtaaatatatgctacgtgtttaggttattagccaaaaacttgttggtacaacatcca 277  Q
    |||||||||||||||||          ||||||||||||||||||||||||||| |  ||||||||||||   |||||||||||||||||||||||||||    
T  48119702 acacaattgatagggataaaaaaaaaatgataaactaaaagatgtaaatatatgtttagtgtttaggtta---gccaaaaacttgttggtacaacatcca 48119606  T
Q  278 aaataaactcgatcgtttgttcaaattatgaacataa 314  Q
    |||||||||||||||||||| |||||||| |||||||    
T  48119605 aaataaactcgatcgtttgtacaaattatcaacataa 48119569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 9767990 - 9767929
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||||||||||||    
T  9767990 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgtat 9767929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 46124028 - 46124089
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    |||||||| |||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  46124028 actagcgttcagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtat 46124089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 11028072 - 11028129
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  11028072 actagcgtccagacggc-actcccgtgcccgtctgtccgctttttctactgcgctaacg 11028129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 15212737 - 15212795
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||    
T  15212737 actagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgctaacg 15212795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 15251956 - 15252014
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||| ||  |||||||| ||||||||||||||||||| ||||||||||||    
T  15251956 actagcgtccagatgggcactcccgtgcccgtctgtccgctttttctactgcgctaacg 15252014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 22155376 - 22155434
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||| ||| ||||||||    
T  22155376 actagcgtccagacggacactcccgtgcccgtctgtccgttttttctactacgctaacg 22155434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 1136157 - 1136224
Alignment:
Q  84 cccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtt 151  Q
    |||||||||||| |||||| ||||||||||||||||| || | || ||||| ||||||| ||||||||    
T  1136157 cccgtctgtccgttttttctactgcgctaacgtatgcatatacttaattatgtttctttgtataagtt 1136224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 53157278 - 53157340
Alignment:
Q  56 gactagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    |||||||||||||||||  |||| ||| |||||||||||||| |||| |||||||||| ||||    
T  53157278 gactagcgtccagacgggcactctcgtgcccgtctgtccgctctttctactgcgctaatgtat 53157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 21972645 - 21972702
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||| ||| |||||||    
T  21972645 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttctactacgctaac 21972702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 21995076 - 21995133
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||| ||| |||||||    
T  21995076 actagcgtccagacgggcactcccgtgcccgtttgtccgctttttctactacgctaac 21995133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 41935300 - 41935243
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||| ||||    
T  41935300 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgttaac 41935243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 6079937 - 6079879
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||| ||||| |  ||| |||| ||||||||||||||||||| ||||||||||||    
T  6079937 actagcgttcagaccggcacttccgtgcccgtctgtccgctttttctactgcgctaacg 6079879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 24552581 - 24552643
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||||||||||||||| ||||  ||  ||||||||| |||||||| |||||||||| |||||    
T  24552581 actagcgtccagacggacactcatgtgtccgtctgtctgctttttctactgcgctaaagtatg 24552643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 24558720 - 24558782
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||||||||||||||| ||||  ||  ||||||||| |||||||| |||||||||| |||||    
T  24558720 actagcgtccagacggacactcttgtgtccgtctgtctgctttttctactgcgctaaagtatg 24558782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 41476131 - 41476035
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttg 153  Q
    |||||||| |||||||| ||||||||  || ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| | ||||||||||    
T  41476131 actagcgttcagacggacactcccgtgtccatctgtccgctttttctactgcactaacgtatgcgttgatttgattatttttctatttataagtttg 41476035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 41475956 - 41475851
Alignment:
Q  205 tgataaactaaaagatgtaaatatatgctacgtgtttaggttattagccaaaaacttgttggtacaacatccaaaataaactcgatcgtttgttcaaatt 304  Q
    ||||||||||||| ||||||||||||  |   ||||||||   ||||||||||| |||||| | ||||||||||||||||||||||||||||| ||| ||    
T  41475956 tgataaactaaaatatgtaaatatatttttattgtttagg---ttagccaaaaa-ttgttgttgcaacatccaaaataaactcgatcgtttgtacaagtt 41475861  T
Q  305 atgaacataa 314  Q
    || |||||||    
T  41475860 atcaacataa 41475851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 15723349 - 15723291
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  15723349 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 15723291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 2248044 - 2248099
Alignment:
Q  59 tagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||| ||||||||  ||||||||||||| |||| |||||||||||    
T  2248044 tagcgtccagacggacactcccgtgtccgtctgtccgctctttctactgcgctaac 2248099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 44201730 - 44201672
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||| ||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  44201730 actagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 44201672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 46123066 - 46123005
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||||||| ||||||||| ||| ||||  |||||||||||||||    
T  46123066 actagcgtccagacgggcactcccgtgcccgtctgttcgcattttttactgcgctaacgtat 46123005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 19193866 - 19193807
Alignment:
Q  56 gactagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||||||||||||  ||||| || || ||||||||||| |||| ||||||||||||    
T  19193866 gactagcgtccagacgggcactcctgtgcctgtctgtccgctctttctactgcgctaacg 19193807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 15847409 - 15847449
Alignment:
Q  13 taaaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    ||||||||||||||||||||  ||||| |||||||||||||    
T  15847409 taaaaataggctacaccaaatccatgttttgcctttattaa 15847449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 6549 - 6611
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||||    
T  6549 actagcgtccagacgggcactcccgtacccgtctgtccgctttttctactgcgctaacgtatg 6611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 117
Target Start/End: Original strand, 8848035 - 8848140
Alignment:
Q  14 aaaaataggctacaccaaaagcat-gtattgcctttattaa-agg-actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgc 110  Q
    ||||| ||||||||||||||| |  |||||||||||||||| ||| ||||||||||||| ||  |||||||| ||||||||||||||||||| |||||||    
T  8848035 aaaaaaaggctacaccaaaagaaaagtattgcctttattaataggtactagcgtccagagggc-actcccgtgcccgtctgtccgctttttctactgcgc 8848133  T
Q  111 taacgta 117  Q
    |||||||    
T  8848134 taacgta 8848140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 23094666 - 23094608
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  23094666 actagcgtccaaacggatactcccgttcccgtctgtccgctctttctactgcgctaacg 23094608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 19383055 - 19382994
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  19383055 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtat 19382994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14606050 - 14606006
Alignment:
Q  9 gcaataaaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  14606050 gcaataaaaataggctacagcaaaagcatgtattgcctttattaa 14606006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 14604034 - 14603975
Alignment:
Q  56 gactagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||||||||||||  |||||||| ||||||||||| ||||||| ||||||||||||    
T  14604034 gactagcgtccagacgggcactcccgtacccgtctgtccactttttctactgcgctaacg 14603975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 19214781 - 19214839
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| || |||||||||    
T  19214781 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctaccgcgctaacg 19214839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 21393484 - 21393426
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  21393484 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 21393426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 2666202 - 2666141
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    |||||| |||||||||  |||||||| |||||||||||| |||||| |||||||||||||||    
T  2666202 actagcatccagacgggcactcccgtgcccgtctgtccgttttttctactgcgctaacgtat 2666141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 17724638 - 17724581
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||| | ||||||||||||||||||| |||||||||||    
T  17724638 actagcgtccagacgggcactcccatgcccgtctgtccgctttttctactgcgctaac 17724581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 23160837 - 23160780
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||||||||    
T  23160837 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaac 23160780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 19002825 - 19002769
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| || |||||||    
T  19002825 actagcgtccagacgggcactcccgtacccgtctgtccgctttttctaccgcgctaa 19002769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 15907151 - 15907093
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||| ||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  15907151 actagcgtctagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 15907093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 32616898 - 32616956
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||| |||||||||||  |||||||| ||||||||||||||||||| ||| ||||||||    
T  32616898 actaacgtccagacgggcactcccgtgcccgtctgtccgctttttctactacgctaacg 32616956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 23097045 - 23097084
Alignment:
Q  14 aaaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  23097045 aaaaataggctacaccaaaatcaagtattgcctttattaa 23097084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 8910024 - 8909966
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||| ||| |||||||| |||||||||| ||||||| ||||    
T  8910024 actagcgtccagacgggcactctcgtgcccgtctgcccgctttttctactgcgcaaacg 8909966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 21683171 - 21683229
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||| |||||||  |||||||| |||||||||||||| |||| | ||||||||||    
T  21683171 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctattgcgctaacg 21683229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 31877271 - 31877213
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||||||||| |  ||||||||  ||||||||||||| |||| ||||||||||||    
T  31877271 actagcgtccagaccggcactcccgtatccgtctgtccgctctttctactgcgctaacg 31877213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 14603728 - 14603785
Alignment:
Q  58 ctagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||| ||||||  ||||| || ||||||||||||||||||| ||||| ||||||    
T  14603728 ctagcgtcaagacggccactccggtgcccgtctgtccgctttttctactgcactaacg 14603785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 17102692 - 17102635
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||| | ||| |||||||||| |||| |||||||||||    
T  17102692 actagcgtccagacgggcactcccatgcccatctgtccgctctttctactgcgctaac 17102635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 13548340 - 13548396
Alignment:
Q  59 tagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||  | || | | ||||||||||||||||||| ||||||||||||    
T  13548340 tagcgtccagacgggcattctcatgcccgtctgtccgctttttctactgcgctaacg 13548396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 18691735 - 18691791
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||| ||||||  | |||||| ||| ||||||||||||||| ||||||||||    
T  18691735 actagcgtctagacgggcattcccgtgcccatctgtccgctttttctactgcgctaa 18691791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 2707193 - 2707131
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||||    
T  2707193 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtatg 2707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 31898643 - 31898581
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||||||||||||||  |||||||| ||||||| |||||| |||| ||||||||||||||||    
T  31898643 actagcgtccagacgggcactcccgtgcccgtctatccgctctttctactgcgctaacgtatg 31898581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 45073808 - 45073861
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||    |||||||| |||||||||||||||||||||||||||||||    
T  45073808 actagcgtccagac----actcccgtgcccgtctgtccgctttttccactgcgctaac 45073861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 24863912 - 24863970
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||| ||| || |||||||||||||||| ||||||||||||    
T  24863912 actagcgtccagacgggcactctcgtgcctgtctgtccgctttttctactgcgctaacg 24863970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 25417080 - 25417138
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||| ||| ||||| || |||||||||||||| |||| ||||||||||||    
T  25417080 actagcgtccagatggacactcctgtgcccgtctgtccgctctttctactgcgctaacg 25417138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 39907580 - 39907536
Alignment:
Q  75 actcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||    
T  39907580 actcccgttcccgtttgtccgttttttctactgcgctaacgtatg 39907536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 24079567 - 24079509
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||||||||| |  ||||||||  ||||||||||||| |||| ||||||||||||    
T  24079567 actagcgtccagacaggcactcccgtgtccgtctgtccgctctttctactgcgctaacg 24079509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 28384690 - 28384646
Alignment:
Q  75 actcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    |||||||| |||||| |||||||||||| |||||||||| |||||    
T  28384690 actcccgtacccgtccgtccgctttttctactgcgctaaagtatg 28384646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 46284 - 46345
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||||    
T  46284 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgtat 46345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 44970835 - 44970879
Alignment:
Q  9 gcaataaaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44970835 gcaataaaaataggctacaccaaaagcatgtattgcctttattaa 44970879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 23120522 - 23120578
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||    
T  23120522 actagcgtccagacggacactcccgtgcccatctgtccgctttttctactgcgctaa 23120578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 508262 - 508323
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||| ||| ||||||||||||| ||||  |||||||||||||||    
T  508262 actagcgtccagacgggcactctcgtgcccgtctgtccgcattttttactgcgctaacgtat 508323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 22216423 - 22216514
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataa 148  Q
    ||||||||||||||||  ||||||||  | ||||||||| |||||| | ||||||||||||||  |  |||||||||| ||| ||| |||||    
T  22216423 actagcgtccagacgggcactcccgtatctgtctgtccgttttttctattgcgctaacgtatgtatgtatttgattatatttttttgtataa 22216514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 8223730 - 8223788
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| ||| |||||||||| |||| ||||| ||||||    
T  8223730 actagcgtccagacgggcactcccgtgcccttctgtccgctctttctactgcactaacg 8223788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 21349404 - 21349454
Alignment:
Q  63 gtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||| | |||||||| |||||||||||||| |||| ||||||||||    
T  21349404 gtccagacgtacactcccgtgcccgtctgtccgctctttctactgcgctaa 21349454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 23126965 - 23126932
Alignment:
Q  84 cccgtctgtccgctttttccactgcgctaacgta 117  Q
    ||||||||||||||||||| ||||||||||||||    
T  23126965 cccgtctgtccgctttttctactgcgctaacgta 23126932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 45537383 - 45537326
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  ||||| || ||||||||| ||||||||| || ||||||||    
T  45537383 actagcgtccagacgggcactcctgtgcccgtctgttcgctttttctaccgcgctaac 45537326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 16047164 - 16047108
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||||||||||  ||| |||| || ||||||||||| |||| ||||||||||    
T  16047164 actagcgtccagacgggcacttccgtgcctgtctgtccgctctttctactgcgctaa 16047108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 22362557 - 22362616
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgt 116  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||||||||||    
T  22362557 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacgt 22362616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 35332605 - 35332649
Alignment:
Q  9 gcaataaaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  35332605 gcaataaaaataggctacactaaaagcatgtattgcctttattaa 35332649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 21112711 - 21112772
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||| ||||||||    
T  21112711 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgataacgtat 21112772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 42883131 - 42883073
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||  ||||||||||||    
T  42883131 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttttactgcgctaacg 42883073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 27032733 - 27032680
Alignment:
Q  63 gtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgt 116  Q
    ||||||||||  |||||||| |||||||||||||| |||| |||||||||||||    
T  27032733 gtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacgt 27032680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 38925437 - 38925494
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||| |||||||    
T  38925437 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactacgctaac 38925494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 163
Target Start/End: Original strand, 28256327 - 28256405
Alignment:
Q  85 ccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataagtttgatttgaattt 163  Q
    ||||||||||||| |||| |||||||||||| ||| |   |||| ||||||||| ||| ||||| |||||||| |||||    
T  28256327 ccgtctgtccgctctttctactgcgctaacgcatgtgattattttattatttttgtttgtataattttgatttaaattt 28256405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 32723842 - 32723804
Alignment:
Q  15 aaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  32723842 aaaatatgctacaccaaaagcatgtattgtctttattaa 32723804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 29391423 - 29391378
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttc 102  Q
    |||| |||||||||||| |||||||| ||||| |||||||||||||    
T  29391423 actatcgtccagacggacactcccgtgcccgtttgtccgctttttc 29391378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 35328810 - 35328867
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  | || ||| |||||||||||||| |||| |||||||||||    
T  35328810 actagcgtccagacgggcattcacgtgcccgtctgtccgctctttctactgcgctaac 35328867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 847 - 789
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| ||||||||||||    
T  847 actagcgtccagacgggcactcccgtgcccgtctgtccgctttttctactgcgctaacg 789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 4642 - 4583
Alignment:
Q  60 agcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||||||||||| ||||||||| ||||||||||| || |||| ||||||||||||||||    
T  4642 agcgtccagacgggtactcccgtgcccgtctgtccactctttctactgcgctaacgtatg 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 52596 - 52538
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| ||||||||||||    
T  52596 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaacg 52538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 43593904 - 43593847
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaac 114  Q
    ||||||||||||||||  |||||||| |||||||||||||| |||| |||||||||||    
T  43593904 actagcgtccagacgggcactcccgtgcccgtctgtccgctctttctactgcgctaac 43593847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 35577352 - 35577413
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtat 118  Q
    ||||||||||||||||  |||||||| ||||||||||||| ||||  | |||||||||||||    
T  35577352 actagcgtccagacgggcactcccgtgcccgtctgtccgcattttttattgcgctaacgtat 35577413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 51033336 - 51033401
Alignment:
Q  83 tcccgtctgtccgctttttccactgcgctaacgtatgcgtagatttgattatttttctttatataa 148  Q
    |||||||||||   |||||| | ||||||||| ||||  |||||||||||||||||||||||||||    
T  51033336 tcccgtctgtcatttttttctattgcgctaacatatgtttagatttgattatttttctttatataa 51033401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 16612222 - 16612280
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||||| |||||| ||| || | |||||||||||||| |||| ||||||||||||    
T  16612222 actagcgtccggacggacacttccatacccgtctgtccgctctttctactgcgctaacg 16612280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 18811385 - 18811327
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  | |||||| ||||||||||| || |||| ||||||||||||    
T  18811385 actagcgtccagacgggcattcccgtgcccgtctgtccactctttctactgcgctaacg 18811327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 50377326 - 50377384
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    |||||||| |||||||  |||||||| |||||||||||||| |||| |||||| |||||    
T  50377326 actagcgttcagacgggcactcccgtgcccgtctgtccgctctttctactgcgttaacg 50377384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 13757135 - 13757191
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaa 113  Q
    ||||||||||||||||  |||||||| ||||||||| |||| |||| ||||| ||||    
T  13757135 actagcgtccagacgggcactcccgtgcccgtctgttcgctctttctactgcactaa 13757191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 5257 - 5207
Alignment:
Q  58 ctagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcg 109  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||| ||||||    
T  5257 ctagcgtccagacggacactcc-gttcccgtctgttcgctttttctactgcg 5207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 33866 - 33905
Alignment:
Q  14 aaaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  33866 aaaaaaaggctacaccaaaagcaagtattgcctttattaa 33905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 11573 - 11611
Alignment:
Q  15 aaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  11573 aaaataggctacaccaaaaccaagtattgcctttattaa 11611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 25873 - 25911
Alignment:
Q  15 aaaataggctacaccaaaagcatgtattgcctttattaa 53  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  25873 aaaataggctacaccaaaaccaagtattgcctttattaa 25911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 28500 - 28438
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    |||||||||||||| |  |||||| | ||||||| ||||||||||| |||||||||| |||||    
T  28500 actagcgtccagacaggcactcccatgcccgtctatccgctttttctactgcgctaatgtatg 28438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 102232 - 102290
Alignment:
Q  57 actagcgtccagacggatactcccgttcccgtctgtccgctttttccactgcgctaacg 115  Q
    ||||||||||||||||  |||||||| ||||| |||||||| |||| ||||||| ||||    
T  102232 actagcgtccagacgggcactcccgtgcccgtttgtccgctctttctactgcgccaacg 102290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 42510 - 42469
Alignment:
Q  78 cccgttcccgtctgtccgctttttccactgcgctaacgtatg 119  Q
    ||||| ||||||||||||||||||| | ||||||||||||||    
T  42510 cccgtgcccgtctgtccgctttttctagtgcgctaacgtatg 42469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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