View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_16 (Length: 312)
Name: NF12803_high_16
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 49700347 - 49700599
Alignment:
| Q |
1 |
acaagagattattgattcccttccaaaagctattcgatctagtatctcatactacttattcttttcaatgatggacaacgtatacttgtttaagggagtg |
100 |
Q |
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| T |
49700347 |
acaagagattattgattcccttccaaaagctattcaatctagtatctcatactacttattcttttcaatgatggacaacgtatacttgtttaagggagtg |
49700446 |
T |
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| Q |
101 |
tcaaaagacctaatttttcaattggtaatattttctttttggttatcctttgatttgatttgacaaaaactgagatcgtatgtgataaaacttaggtctg |
200 |
Q |
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| T |
49700447 |
tcaaaagacctaatttttcaattggtaatattttctttttggttatcctttgatttgatttgacaaaaactgagatcgtatgtgataaaactttggtctg |
49700546 |
T |
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| Q |
201 |
tgatcagtgagcatctttcggtatttggtaatcaataagtctcactagagagc |
253 |
Q |
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| T |
49700547 |
tgatcagtgagcatctttcggtatttggtaatcaataagtttcactagagagc |
49700599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Original strand, 49700616 - 49700644
Alignment:
| Q |
270 |
tgagacagactctttcttcacatgtttat |
298 |
Q |
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| T |
49700616 |
tgagacagactctttcttcacatgtttat |
49700644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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