View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_18 (Length: 310)
Name: NF12803_high_18
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 40182872 - 40183167
Alignment:
| Q |
15 |
agagacactcgaacttgacgtttcatctgatcaaagcgctacttcagccgtggacactattatatcaaaatacggacgtatcgacattctagttaataac |
114 |
Q |
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| T |
40182872 |
agagacactcgaacttgacgtttcatctgatcaaagcgctacttcagccgtggacactattatatcaaaatacggacgtatcgacattctagttaataac |
40182971 |
T |
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| Q |
115 |
gccggaataggtagcacgggtccattagccgaattaccactagacactattagaaaaacattggaaattaacacgttgggacaactaagaatggtgcaac |
214 |
Q |
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| T |
40182972 |
gccggaataggtagcacaggtccattagccgaattaccactagacactattagaaaaacattggaaattaacacgttgggacaactaagaatggtgcaac |
40183071 |
T |
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| Q |
215 |
aagttgtgcctcacatggctctgnnnnnnngtggaaccatagttaatgttggaagtgtagttggaaatatttcaacaccatgggcagggtcatatt |
310 |
Q |
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| T |
40183072 |
aagttgtgcctcacatggctctgaaaaaaagtggaaccatagttaatgttggaagtgtagttgggaatatttcaacaccatgggcagggtcatatt |
40183167 |
T |
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