View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_1_N (Length: 575)
Name: NF12803_high_1_N
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 338 - 571
Target Start/End: Original strand, 6089230 - 6089460
Alignment:
| Q |
338 |
ttcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaaatggaactgaaccaccacttcctcctcctccttcaaccaaccct |
437 |
Q |
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| T |
6089230 |
ttcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaaatggaactgaaccaccacttcct---cctccttcaaccaaacct |
6089326 |
T |
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| Q |
438 |
tgaatcacacctccaccaccataaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgaca |
537 |
Q |
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| T |
6089327 |
tgaatcacacctccaccaccataaatcatagatccatatctttgtagattcaactccaaaggtaaattactactaacacttttatttgatgaaagtgaca |
6089426 |
T |
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| Q |
538 |
aagacaaaggttcatgattattcaacatcatagt |
571 |
Q |
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| T |
6089427 |
aagacaaaggttcatgattattcaacatcatagt |
6089460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 6089062 - 6089135
Alignment:
| Q |
160 |
ctcatcaagcatagtcaacaatcttgatttattacgaccatcaccaaatggatcttcttcactcaatctttcca |
233 |
Q |
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| T |
6089062 |
ctcatcaagcatagtcaacaatcttgatttattgcgaccatcaccaaatggatcttcttcactcaatctttcca |
6089135 |
T |
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