View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12803_high_3 (Length: 463)

Name: NF12803_high_3
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12803_high_3
NF12803_high_3
[»] chr4 (2 HSPs)
chr4 (7-262)||(734484-734739)
chr4 (330-362)||(734807-734839)
[»] chr3 (3 HSPs)
chr3 (7-262)||(45390876-45391131)
chr3 (7-245)||(45386507-45386745)
chr3 (330-362)||(45391199-45391231)
[»] chr8 (2 HSPs)
chr8 (26-170)||(40577944-40578088)
chr8 (159-229)||(40578165-40578235)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 734484 - 734739
Alignment:
Q  7 ttttcctcctcaggaggaattgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttct 106  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  734484 ttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttct 734583  T
Q  107 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734584 ctcctttcacaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 734683  T
Q  207 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  734684 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 734739  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 734807 - 734839
Alignment:
Q  330 ctaaacaaaataaaattgctcagaatcagcgcc 362  Q
    |||||||||||||||||||||||||||||||||    
T  734807 ctaaacaaaataaaattgctcagaatcagcgcc 734839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 262
Target Start/End: Original strand, 45390876 - 45391131
Alignment:
Q  7 ttttcctcctcaggaggaattgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttct 106  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45390876 ttttcctcctcaggagcaattgggatcggagaaagaagctcaacctttctatgactcttcttctgaaccctttccaaaaccttcaatggctccgctttct 45390975  T
Q  107 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45390976 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 45391075  T
Q  207 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45391076 acaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag 45391131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 45386507 - 45386745
Alignment:
Q  7 ttttcctcctcaggaggaattgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttct 106  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45386507 ttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctctgctttct 45386606  T
Q  107 ctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccgacgaactttccgagcacagctttc 206  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  45386607 ctcctttcacaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccgacgaactttccgagcacagccttc 45386706  T
Q  207 acaatgcatgaaaactttcagcaaaatctctgccggagg 245  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  45386707 acaatgcatgaaaactctcagcaaaatctctgctggagg 45386745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 45391199 - 45391231
Alignment:
Q  330 ctaaacaaaataaaattgctcagaatcagcgcc 362  Q
    |||||||||||||||||||||||||||||||||    
T  45391199 ctaaacaaaataaaattgctcagaatcagcgcc 45391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 40577944 - 40578088
Alignment:
Q  26 ttgggatcggagtgagaagctcaaccttcctgtgactcttcttctgaaccctctccaaaaccttcaatggctccgctttctctcctttcacaaccaccgt 125  Q
    ||||||||||||  ||||||||||| |  || ||||||||| ||||||| || || | |||||||||||| |||||||| |||||||| ||||  ||| |    
T  40577944 ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctttttctcctttaacaataacctt 40578043  T
Q  126 atgagacttgcaatcagttatcacttcttcaacacctggaaaatc 170  Q
     ||||| ||||||||||| | ||| |||||||| |||| ||||||    
T  40578044 gtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatc 40578088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 40578165 - 40578235
Alignment:
Q  159 acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagca 229  Q
    |||||||||| |||| |  || ||||||||||| |||||||| | ||||||||||||||| ||||| ||||    
T  40578165 acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagca 40578235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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