View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_4 (Length: 457)
Name: NF12803_high_4
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 785380 - 784950
Alignment:
| Q |
1 |
ttatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttctaat |
100 |
Q |
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| T |
785380 |
ttatttgcattcccttcccctttgtgttgctttttacttatttaattagtgctataacttagttgattttgccaacacatactatctggaaccttctaat |
785281 |
T |
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| Q |
101 |
tttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatgca |
200 |
Q |
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| T |
785280 |
tttccaatacaaaaagaatgaaaaagccacggttcctttgaatttgaatgacaataacaaatcattaggagatcactgattcctttataattagtatgca |
785181 |
T |
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| Q |
201 |
taaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaatatgttgcttatt |
300 |
Q |
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| T |
785180 |
taaagatgcaatataaagttgtggttgacattggctaggaacaaggatcatgtaattaatttattcattagtgcaccaaatgatcaaaatgttggttatt |
785081 |
T |
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| Q |
301 |
attttatgggaaatgctaatcaaatatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcatttgtt |
400 |
Q |
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| T |
785080 |
attttatgggaaatgctaatcaagtatagcaaacacaatatacaacaaaaagtgaagtattctctgagttaaataatttatgttcttcaattcagttgtt |
784981 |
T |
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| Q |
401 |
cattcataaggtaaaggatgcattaataatg |
431 |
Q |
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| T |
784980 |
cattcataaggtaaaggatacattaataatg |
784950 |
T |
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