View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_5 (Length: 453)
Name: NF12803_high_5
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 148 - 412
Target Start/End: Original strand, 52912629 - 52912894
Alignment:
| Q |
148 |
ctgcagcgaccaatcatttgtctaatt----gttttcaaacaagaacaaaaacatcaccttctcttctct-----aagaggagaagattgtccaacgcgt |
238 |
Q |
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| T |
52912629 |
ctgcaacgaccaatcatttgtctaattaattgttttcaaacaagaacaaaaacatcaccttctcttctcttctctaagaggagaagattgtccaacgcgt |
52912728 |
T |
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| Q |
239 |
gcatgcacttgcgtgtgagagaagagaagtattatttctccgtcacccaatcaatatcctcacctcatctgtatttaaagcctagctagctagctagctt |
338 |
Q |
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| T |
52912729 |
gcatgcacttgcgtgtgagagaagagaagtattatttcttcgtcacccaatcaatatcctcacctcatctgtatttaaagcctagctagctagcttg--- |
52912825 |
T |
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| Q |
339 |
gatgcatgcacccaacgccatttcacagttctgtcacagactcataaagaaaaagatagaaatccacacataaa |
412 |
Q |
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| T |
52912826 |
-----atgcacccaacgccatttcacagttctgtcacagactcataaagaaaaagatagaaatccacacataaa |
52912894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 52912541 - 52912584
Alignment:
| Q |
20 |
acatcatcacaacttggaaattgctttagtttttaaaacttaaa |
63 |
Q |
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| T |
52912541 |
acatcatcacaacctggaaattgctttagtttttaaaacttaaa |
52912584 |
T |
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