View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_6 (Length: 443)
Name: NF12803_high_6
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 385
Target Start/End: Original strand, 38673275 - 38673630
Alignment:
| Q |
30 |
tccaagtacacagcaaaagcccctacaacaatcacataacacacgtaagtaacagcaatcaaaaagtgttcatctaattgaggaattccaaacaaaccgc |
129 |
Q |
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| T |
38673275 |
tccaagtacacagcaaaagcccctacaacaatcacataacacacgtaagtaacagcaatcaaaaagtgttcatctaattgagaaattccaaacaaaccgc |
38673374 |
T |
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| Q |
130 |
aaaatggttttacctttcctcttgcctcctccctgatcaacataacgggcagtatcattgaacacacgcagcatcggaacaataccgttagacgttccat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38673375 |
aaaatggttttacctttcctcttgcctcctccctgatcaacataacgggcagtatcattgaacacacgcagcatcggaacaataccgttagacgttccat |
38673474 |
T |
|
| Q |
230 |
ttgttccccgaatgtaactaccatgggcacgtatgttgtgaacagaaacaccaattcctccagcagatttactaatgacagcacactgcattaatgtatc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| | | |||||||| |
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| T |
38673475 |
ttgttccccgaatgtaactaccatgggcacgtatgttgtgaacagaaacaccaattcctcctgcagatttactaataacagcacactccttcaatgtatc |
38673574 |
T |
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| Q |
330 |
atagattccctcagtactatcctctttcatgcacaccaagaagcaactactcaact |
385 |
Q |
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||| || |||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38673575 |
ataaatcccctcaatactatcctctttcatacacaccaagaagcaactactcaact |
38673630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 261 - 434
Target Start/End: Original strand, 38669408 - 38669581
Alignment:
| Q |
261 |
tatgttgtgaacagaaacaccaattcctccagcagatttactaatgacagcacactgcattaatgtatcatagattccctcagtactatcctctttcatg |
360 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38669408 |
tatgttgtgaacagaaacaccaatccctccagcagatttactaatgacagcacactgctttaatgtatcatagattccctcagtactatcctctttcatg |
38669507 |
T |
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| Q |
361 |
cacaccaagaagcaactactcaactacaattggacatcctaaataccttggtgataatttcatacacatcattg |
434 |
Q |
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| T |
38669508 |
cacaccaagaagcaactactcaactacaattggacatcctaaataccttggtgataatttcatacacatcattg |
38669581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 432
Target Start/End: Original strand, 38674071 - 38674117
Alignment:
| Q |
386 |
acaattggacatcctaaataccttggtgataatttcatacacatcat |
432 |
Q |
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| T |
38674071 |
acaattggacatgctaactaccttgatgataatttcatacacatcat |
38674117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 141 - 385
Target Start/End: Original strand, 2060933 - 2061177
Alignment:
| Q |
141 |
acctttcctcttgcctcctccctgatcaacataacgggcagtatcattgaacacacgcagcatcggaacaataccgttagacgttccatttgttccccga |
240 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2060933 |
acctttcctcttgcctcccccctgatcaacataacgtgcagtatcattgaacacacgaagcatcggaacaataccattagacgttccatttgttccccga |
2061032 |
T |
|
| Q |
241 |
atgtaactaccatgggcacgtatgttgtgaacagaaacaccaattcctccagcagatttactaatgacagcacactgcattaatgtatcatagattccct |
340 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||||| || |||| |
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| T |
2061033 |
atgtaactaccttgggcacgtatattgtgaacagaaacaccaatccctccagcagatttactaatgacagcacactccttcaatgtatcataaatcccct |
2061132 |
T |
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| Q |
341 |
cagtactatcctctttcatgcacaccaagaagcaactactcaact |
385 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2061133 |
caatactatcctctttcatgcaaaccaagaagcaactactcaact |
2061177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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