View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12803_high_7 (Length: 378)

Name: NF12803_high_7
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12803_high_7
NF12803_high_7
[»] chr5 (6 HSPs)
chr5 (32-378)||(32267371-32267717)
chr5 (31-373)||(41901397-41901739)
chr5 (72-375)||(41889411-41889717)
chr5 (63-232)||(12845520-12845689)
chr5 (32-234)||(38267557-38267759)
chr5 (131-228)||(37937882-37937979)
[»] chr8 (10 HSPs)
chr8 (32-304)||(27922404-27922676)
chr8 (131-372)||(18315133-18315377)
chr8 (121-302)||(17636327-17636515)
chr8 (121-321)||(28246206-28246407)
chr8 (87-360)||(34936035-34936311)
chr8 (128-231)||(17628018-17628121)
chr8 (57-231)||(21235479-21235653)
chr8 (131-233)||(32151296-32151398)
chr8 (178-234)||(17643597-17643653)
chr8 (131-159)||(44736530-44736558)
[»] chr4 (34 HSPs)
chr4 (42-372)||(546819-547152)
chr4 (31-360)||(1548298-1548628)
chr4 (48-321)||(553391-553667)
chr4 (41-302)||(7225813-7226077)
chr4 (160-360)||(1600443-1600646)
chr4 (57-323)||(55908637-55908906)
chr4 (131-360)||(1524358-1524590)
chr4 (131-234)||(7307855-7307958)
chr4 (57-360)||(8186963-8187269)
chr4 (57-233)||(8184032-8184208)
chr4 (131-323)||(3438475-3438669)
chr4 (144-321)||(644839-645018)
chr4 (58-174)||(370842-370958)
chr4 (191-302)||(53761702-53761816)
chr4 (150-233)||(1519144-1519227)
chr4 (132-324)||(659707-659900)
chr4 (64-303)||(640843-641085)
chr4 (131-302)||(570346-570517)
chr4 (131-233)||(1513409-1513511)
chr4 (259-323)||(1517408-1517472)
chr4 (260-323)||(6006455-6006518)
chr4 (260-298)||(566316-566354)
chr4 (131-233)||(12121459-12121561)
chr4 (131-180)||(558493-558542)
chr4 (41-233)||(1537769-1537961)
chr4 (131-231)||(1552771-1552871)
chr4 (165-233)||(12116577-12116645)
chr4 (260-323)||(1495831-1495894)
chr4 (260-323)||(1533899-1533962)
chr4 (159-234)||(1545796-1545871)
chr4 (260-375)||(8183887-8184002)
chr4 (64-113)||(6006255-6006304)
chr4 (133-233)||(532186-532286)
chr4 (131-270)||(55505070-55505212)
[»] chr3 (7 HSPs)
chr3 (42-302)||(51113711-51113974)
chr3 (123-298)||(51120827-51121005)
chr3 (131-302)||(13470662-13470836)
chr3 (264-323)||(1657378-1657437)
chr3 (131-375)||(51764300-51764544)
chr3 (42-375)||(514585-514921)
chr3 (121-231)||(1657236-1657346)
[»] chr2 (4 HSPs)
chr2 (57-323)||(1037573-1037842)
chr2 (41-229)||(45245091-45245279)
chr2 (128-233)||(32785774-32785879)
chr2 (264-361)||(32785646-32785740)
[»] chr6 (24 HSPs)
chr6 (41-302)||(14820598-14820862)
chr6 (121-321)||(11936186-11936389)
chr6 (121-321)||(11948166-11948369)
chr6 (41-302)||(6394769-6395033)
chr6 (47-302)||(6432072-6432330)
chr6 (63-229)||(14818309-14818475)
chr6 (128-302)||(6402852-6403029)
chr6 (48-300)||(6426423-6426678)
chr6 (263-375)||(9411482-9411594)
chr6 (57-298)||(7994116-7994360)
chr6 (131-298)||(6585171-6585341)
chr6 (131-302)||(7119152-7119326)
chr6 (131-302)||(7131630-7131804)
chr6 (132-302)||(6594536-6594709)
chr6 (131-233)||(6410001-6410103)
chr6 (144-231)||(12102274-12102361)
chr6 (63-233)||(6589325-6589495)
chr6 (131-372)||(6415961-6416202)
chr6 (47-210)||(10579761-10579925)
chr6 (129-229)||(14802329-14802429)
chr6 (131-233)||(6423212-6423314)
chr6 (64-181)||(19632367-19632484)
chr6 (143-233)||(28935056-28935146)
chr6 (260-297)||(12097145-12097182)
[»] scaffold0295 (1 HSPs)
scaffold0295 (56-323)||(533-803)
[»] chr1 (8 HSPs)
chr1 (126-302)||(19468429-19468608)
chr1 (137-233)||(52082582-52082678)
chr1 (41-202)||(7554393-7554554)
chr1 (135-233)||(52092776-52092874)
chr1 (258-373)||(7554544-7554659)
chr1 (258-375)||(9581193-9581310)
chr1 (124-202)||(29658929-29659007)
chr1 (258-375)||(9586761-9586878)
[»] chr7 (3 HSPs)
chr7 (267-324)||(7977712-7977769)
chr7 (131-302)||(10614588-10614762)
chr7 (41-302)||(15092081-15092345)
[»] scaffold0807 (1 HSPs)
scaffold0807 (142-302)||(1394-1560)
[»] scaffold0041 (1 HSPs)
scaffold0041 (43-177)||(39091-39225)
[»] scaffold0014 (2 HSPs)
scaffold0014 (100-215)||(88803-88918)
scaffold0014 (260-315)||(88943-88998)


Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 32 - 378
Target Start/End: Original strand, 32267371 - 32267717
Alignment:
Q  32 acaaccatacaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttc 131  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  32267371 acaaccatagaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttc 32267470  T
Q  132 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32267471 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttca 32267570  T
Q  232 tttctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaaca 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32267571 tttctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaaattgaacgataccttcttcagatatgcgacaaca 32267670  T
Q  332 attgctcaaatcaagcagctgcaaattggagaagatggaagcaagca 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32267671 attgctcaaatcaagcagctgcaaattggagaagatggaagcaagca 32267717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 31 - 373
Target Start/End: Complemental strand, 41901739 - 41901397
Alignment:
Q  31 aacaaccatacaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaattt 130  Q
    ||||||||| |||| |||||||||| | |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  41901739 aacaaccattcaaactaatctttctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaattt 41901640  T
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||| |||||||||||||||||      
T  41901639 caaaagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagtct 41901540  T
Q  231 atttctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaac 330  Q
    ||||||||| ||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||    
T  41901539 atttctagtctcactatggaacacttggataagttcaaatgtctaatgttacaacacatccttaaaacttgaacaataccttcttcaaatatgcgacaac 41901440  T
Q  331 aattgctcaaatcaagcagctgcaaattggagaagatggaagc 373  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  41901439 aattgctcaaatcaagcagctgcaaattggggaaaatggaagc 41901397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 72 - 375
Target Start/End: Complemental strand, 41889717 - 41889411
Alignment:
Q  72 tctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgctt 171  Q
    ||||| ||||| ||||||||||||||||||| ||||| |||||||| | || |||||||| ||||||| |||||||||||||||||| ||||||||| ||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  172 catcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaacactgggataagttcaa 268  Q
    ||||||||||| |||| | ||| |||||||| ||||||||||||||||||| ||||||||||||   ||| |||||| |||||||   ||||||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaa 41889518  T
Q  269 atgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattggagaagatg 368  Q
    || |||||||||||||||||||||||||||||||   |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| | ||| |||    
T  41889517 atatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatg 41889418  T
Q  369 gaagcaa 375  Q
    |||||||    
T  41889417 gaagcaa 41889411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 12845520 - 12845689
Alignment:
Q  63 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttg-aggtgacaatttcaaaagcccacaacaactctttgagatcata 161  Q
    ||||| ||| |||| || ||| |||||||||||| ||| | ||||||||||||||  ||||  ||||| ||| || ||||||||||||||||||||   |    
T  12845520 gtgcattttgctaccacttgcctcactcccttctctgtaacatcattacaattttccaggtc-caattgcaatagaccacaacaactctttgagattgca 12845618  T
Q  162 taaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcat 232  Q
    || ||||||||||||||       | | | ||||||||||||||||| |||||||||||||||| ||||||    
T  12845619 tatagtgcttcatcatcggtcgcggaccgggacaagttcaatacctctaatttgggaacttcaaggttcat 12845689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 38267759 - 38267557
Alignment:
Q  32 acaaccatacaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttc 131  Q
    |||| ||| |||||| |||| ||| ||||  ||||||||||  || |||||| ||||||||||||  |||| ||   |||||  |||  | |||| ||||    
T  38267759 acaatcatccaaattgatctctctgagttttgtgcagtttttgaccacatgcatcactcccttctcggtgacattcgtacaaagttgcagcgacagtttc 38267660  T
Q  132 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    ||||||||||  ||  |||||||||| | ||| ||||  |||||||||||| |||| |||| ||||| ||| ||||| |  ||||||||||||||||| |    
T  38267659 aaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagttga 38267560  T
Q  232 ttt 234  Q
    |||    
T  38267559 ttt 38267557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 37937882 - 37937979
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagt 228  Q
    ||||||||||| |||  |||||||||| | ||| |||| || |||||||| | |||| |||| ||||| ||| ||||| |  ||||||||||||||||    
T  37937882 caaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagt 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 304
Target Start/End: Original strand, 27922404 - 27922676
Alignment:
Q  32 acaaccatacaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttc 131  Q
    |||||||| |||| |||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| | |||||||||||    
T  27922404 acaaccatccaaactaatctttctcagttgagtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttc 27922503  T
Q  132 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||| ||||||||||||||||||||||||||||    
T  27922504 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T
Q  232 tttctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaac 304  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  27922604 tttctagtttcaccattgaacacttggataagttcaaatgtctaatgttacagcatatccctaaaacttgaac 27922676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 372
Target Start/End: Complemental strand, 18315377 - 18315133
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||||| || ||||||||||||||||| ||| |||||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  18315377 caaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttc 18315278  T
Q  231 atttc---tagtttcactgttgaa-cactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcga 326  Q
    ||| |   ||| |||| | ||||| ||| | | ||||||||| |||||||| | | ||||  | | ||||||||||   ||||||||||||| ||||  |    
T  18315277 attccacgtagcttcattcttgaatcac-gagctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatgtta 18315179  T
Q  327 caacaattgctcaaatcaagcagctgcaaattggagaagatggaag 372  Q
       || | |||||||||||||| ||||||||||| ||| |||||||    
T  18315178 tcgcagtagctcaaatcaagcaactgcaaattggggaaaatggaag 18315133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 302
Target Start/End: Complemental strand, 17636515 - 17636327
Alignment:
Q  121 gtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaac 220  Q
    ||||||||| |||||| | |  ||||||||||||||||| ||| | ||||||||| ||||||  ||| |||||||||||||| |||||||||||||||||    
T  17636515 gtgacaattgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaac 17636416  T
Q  221 ttcaaagttcatt-------tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    |||||||||||||       | |||||||||| |||||||  ||  |||||||||||| ||||| ||| |||||  |||||||||||||    
T  17636415 ttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttga 17636327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 121 - 321
Target Start/End: Complemental strand, 28246407 - 28246206
Alignment:
Q  121 gtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaac 220  Q
    |||||| || ||||||||| | ||||||||||||||||  ||| |||| || ||  |||||| ||||   |||||||| ||| ||||||| |||||||||    
T  28246407 gtgacagttgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaac 28246310  T
Q  221 ttcaaagttcatt---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttca 317  Q
    ||||||||||| |   | ||| |||| | |||||||  | | ||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  28246309 ttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttca 28246210  T
Q  318 gata 321  Q
    ||||    
T  28246209 gata 28246206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 87 - 360
Target Start/End: Complemental strand, 34936311 - 34936035
Alignment:
Q  87 actcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattg 186  Q
    ||||||||||  |||| ||||  |||||||||| || | | || ||||||||||| ||||||||||| |||   ||| |||| || |||||||||| |||    
T  34936311 actcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttg 34936212  T
Q  187 tctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttaca 283  Q
    | | |||||||| ||| ||||| | ||| ||||| |||||| |||||   |  || |||||| ||||||| | ||  |||| |||||||||||||| |||    
T  34936211 tatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaatgtctaatgtcaca 34936112  T
Q  284 acatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgg 360  Q
    |||| |||||||||| |||   |||||||  | |||||||| ||  |||| ||||||||||||||| ||||||||||    
T  34936111 acatctccttaaaacatgataaataccttgattagatatgccactgcaatcgctcaaatcaagcagatgcaaattgg 34936035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 17628121 - 17628018
Alignment:
Q  128 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaag 227  Q
    |||||| |||||| ||||| |||||||||||| |   ||||||| |||||||||| | || |||||||||||||| ||||||||||| | || || ||||    
T  17628121 tttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaag 17628022  T
Q  228 ttca 231  Q
    ||||    
T  17628021 ttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 21235479 - 21235653
Alignment:
Q  57 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgaga 156  Q
    ||||| |||||||||||||| ||||| ||||| ||  | || |||| || || |||||  | | || ||| || ||||||||  | ||| |||||||| |    
T  21235479 agttgtgtgcagttttctaccacatgattcacgcctcttttagtgacataataacaatgctcaagtaacagttgcaaaagcctgcgacagctctttgaaa 21235578  T
Q  157 tcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    ||| ||| ||| |||| | |||||||  ||| | |||||||||||| ||||||| ||||||||||||||||||||    
T  21235579 tcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 32151296 - 32151398
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||| ||||||||||||||||| ||| |||| |||||||||||   ||||   ||||||||| || |||||||  |||| |||||| ||||||    
T  32151296 caaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttc 32151395  T
Q  231 att 233  Q
    |||    
T  32151396 att 32151398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 17643653 - 17643597
Alignment:
Q  178 caactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcattt 234  Q
    ||||| |||| ||||||||||||||  ||||||||||||||||| ||| ||||||||    
T  17643653 caactcttgtttgtgacaagttcaacgcctccaatttgggaactccaacgttcattt 17643597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 44736530 - 44736558
Alignment:
Q  131 caaaagcccacaacaactctttgagatca 159  Q
    |||||||||||||||||||||||||||||    
T  44736530 caaaagcccacaacaactctttgagatca 44736558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 42 - 372
Target Start/End: Original strand, 546819 - 547152
Alignment:
Q  42 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccac 141  Q
    ||||| |||| ||| ||||  |||||||||||||  ||||| ||||||||||||| ||||| || |  ||| | ||   || |||||| |||||||||||    
T  546819 aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccac 546918  T
Q  142 aacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tag 238  Q
    |||||||||||||||||| ||| |||| ||||||||  || |||||  ||||||||||||  ||||||||||| |||||||||||||||||| |   |||    
T  546919 aacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaatag 547018  T
Q  239 tttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctc 338  Q
     ||||||  | |||| | ||||||||||||||| || || ||||||||| |||||||||| | |   ||||  ||||||||||||  || |||||  ||     
T  547019 gttcactactaaacaattggataagttcaaatgccttatcttacaacatctccttaaaacatcacaaatactgtcttcagatatgttacgacaataactt 547118  T
Q  339 aaatcaagcagctgcaaattggagaagatggaag 372  Q
    ||||||||||| |||||||||| ||| |||||||    
T  547119 aaatcaagcagttgcaaattggggaacatggaag 547152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 360
Target Start/End: Complemental strand, 1548628 - 1548298
Alignment:
Q  31 aacaaccatacaaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaattt 130  Q
    ||||||| | ||||||||| | ||| ||||||| |||||||||| ||| ||| ||||||||||||| ||||||||  ||||||  ||   || |||| |     
T  1548628 aacaaccttccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtgatatttttacaacgtttttgtaacaagtg 1548529  T
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||||||||||||||||||||| ||  |||| |||||||||||   |||| |||||||||||||| ||||||| |||||||| ||||||||||    
T  1548528 caaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttc 1548429  T
Q  231 atttc----tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcga 326  Q
    | | |    ||| |||||| || |||   | | ||||||||| |||||||| |||||||||   |||||||||| |   |||||||| || ||||||| |    
T  1548428 agtccaaagtagcttcacttttaaactacgagctaagttcaactgtctaatcttacaacat---cttaaaacttcacaaataccttcgtctgatatgcca 1548332  T
Q  327 caacaattgctcaaatcaagcagctgcaaattgg 360  Q
    |  |||||  ||||||||||||| ||||||||||    
T  1548331 ctgcaattaatcaaatcaagcagttgcaaattgg 1548298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 48 - 321
Target Start/End: Original strand, 553391 - 553667
Alignment:
Q  48 atctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaac 147  Q
    |||| ||||||||| |||||||||||||| ||||| |||||||| || | ||||| |||| ||||||         ||| || |||||||||| ||||||    
T  553391 atctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaac 553490  T
Q  148 tctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca---tttctagtttcac 244  Q
    ||||||| |||| || ||||||||||||||||||| ||||   |||||||||||| ||||||| |||| |||||| ||||||||   |   ||  |||||    
T  553491 tctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcac 553590  T
Q  245 tgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagata 321  Q
    | |||||||  ||| |||||||||||||||||||||||||||| |||||||||| ||||| | | ||||||||||||    
T  553591 tcttgaacagcgggttaagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagata 553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 302
Target Start/End: Complemental strand, 7226077 - 7225813
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    |||||| |||| ||| |||||| ||||||||||||| || ||||||| ||||||||  ||||  |||  |||| |||   || | | || |||||| |||    
T  7226077 caaattgatctctctcagttgcttgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtcca 7225978  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcattt---cta 237  Q
    |||||||||||||| |||| |  |||| |||  ||||||||| |||| |||||||||||||| |||||||||| | |||||||||||||||| |    ||    
T  7225977 caacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgta 7225878  T
Q  238 gtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    | |||||| ||| ||| | ||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  7225877 gcttcactcttggacagtaggataagttcaaatgtctaatcttacaacatctccgtaaaacttga 7225813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 160 - 360
Target Start/End: Original strand, 1600443 - 1600646
Alignment:
Q  160 tataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttct---agtttcactgttgaacactg 256  Q
    |||| ||||||||||| |||||  |||| | |||||||||||| ||||||| |||  ||||||||||||||||| ||   || |||| | ||||||||||    
T  1600443 tatagagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactg 1600542  T
Q  257 ggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaa 356  Q
    || |||||||||||||||||| ||| || || ||||||||||||||   ||||||||||||||||||  |   ||| |||||||||||||||| ||||||    
T  1600543 ggctaagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatgttaatgcaactgctcaaatcaagcagttgcaaa 1600642  T
Q  357 ttgg 360  Q
    ||||    
T  1600643 ttgg 1600646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 323
Target Start/End: Complemental strand, 55908906 - 55908637
Alignment:
Q  57 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgaga 156  Q
    ||||| ||||||||||| |||||||| ||||| || |||| |||||  |||| ||||||||   |  ||| ||  ||||||||||||||| |||||||||    
T  55908906 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 55908807  T
Q  157 tcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcactgttgaaca 253  Q
    ||||||| |||| ||||||||||||   ||| ||||||||||| || ||||| ||||  ||||||| |||||| |||     |||||||||| |||||||    
T  55908806 tcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaaca 55908707  T
Q  254 ctgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
     | || ||| |||||||||||||  ||||||||| |||||| ||||| |   ||||||||||||||||||    
T  55908706 gtaggctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatg 55908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 131 - 360
Target Start/End: Complemental strand, 1524590 - 1524358
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||| |||||||| |||||||||||| |||| ||||||||||||  ||||  ||||||| ||||| |||||||| ||||||||||||||||||    
T  1524590 caaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttc 1524491  T
Q  231 att---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgac 327  Q
    |||   |  ||||  | | | ||||| | || |||||||||||| ||||  ||||||||| |||||||||| ||||  |||||||||||||||| |        
T  1524490 attccatgaagttctattttagaacagttggctaagttcaaatgcctaagtttacaacatctccttaaaacctgaagaataccttcttcagatacgtatg 1524391  T
Q  328 aacaattgctcaaatcaagcagctgcaaattgg 360  Q
    | ||||  || ||||||||||||||||||||||    
T  1524390 agcaataacttaaatcaagcagctgcaaattgg 1524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 7307855 - 7307958
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||||| ||||||||||||||||||||||   ||||||||||||||||||  ||| | |||||||||||||||||||||||||||||||| |||||||    
T  7307855 caaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttc 7307954  T
Q  231 attt 234  Q
    ||||    
T  7307955 attt 7307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 360
Target Start/End: Complemental strand, 8187269 - 8186963
Alignment:
Q  57 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgaga 156  Q
    |||||||||||||||| ||| |||| | |||||||||||  |||||  | |  ||||||||   || |||| | |||||||||||||||||||||||| |    
T  8187269 agttgcgtgcagttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaa 8187170  T
Q  157 tcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaaca 253  Q
    |   |||||||| || |||||||||| |||| |||||||||||||| ||||||| ||||| || ||||||||||||| |    ||    ||| ||| |||    
T  8187169 ttgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggaca 8187070  T
Q  254 ctgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgc 353  Q
     | || |||||||||||  ||||| | ||||||| || | |||||||||   ||||||||||||||||||  | | ||||  ||||||||||||| ||||    
T  8187069 gtaggctaagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatgtcatagcaatgactcaaatcaagcaactgc 8186970  T
Q  354 aaattgg 360  Q
    |||||||    
T  8186969 aaattgg 8186963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 8184208 - 8184032
Alignment:
Q  57 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgaga 156  Q
    ||||| ||||| |||||||  ||||||||||||||||  | ||||||    | ||||||||   || ||| || ||||||||||||||||||||||||||    
T  8184208 agttgtgtgcaattttctagcacatgcttcactccctcatctgtgatcatttcacaattttccagtaacagttccaaaagcccacaacaactctttgaga 8184109  T
Q  157 tcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    |   ||| ||||||  |||||||||| |||| |||||||||||||| ||||| | ||| ||||||||||||||||||    
T  8184108 ttgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 131 - 323
Target Start/End: Complemental strand, 3438669 - 3438475
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||||||||||||||||||| | ||  |||  || |||||||||| |||| ||||||||| |||||||||||||||| | ||| |||||||||    
T  3438669 caaaagcccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttc 3438571  T
Q  231 atttct---agtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    ||| |    |  ||||||  | ||||    | |||||||||||||||||| ||||||||| |||||||||||||||  | |||||| |||||||||    
T  3438570 attgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaacttgaataacaccttcgtcagatatg 3438475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 321
Target Start/End: Original strand, 644839 - 645018
Alignment:
Q  144 caactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttctagt---t 240  Q
    |||||||||||||||| ||||| || || ||| | |||| ||||   ||||||||  || ||||||| |||||||||||||||||||| |   |||   |    
T  644839 caactctttgagatcaaataaa-tgatttatcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaaagttcaatgtaagtagct 644937  T
Q  241 tcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagata 321  Q
    ||| | |||||||  | | ||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||    
T  644938 tcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaaccataccttcttcagata 645018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 370842 - 370958
Alignment:
Q  58 gttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagat 157  Q
    |||| ||||||||||  || ||||||||||||||| ||||||||||| | | |||||||||  || | | || |||||||| ||||||||||||||||||    
T  370842 gttgtgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagat 370941  T
Q  158 catataaagtgcttcat 174  Q
    || || |||||||||||    
T  370942 cacatgaagtgcttcat 370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 53761816 - 53761702
Alignment:
Q  191 tgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacat 287  Q
    ||||||||||||  |||| |  ||||||||| ||||||||||| |   ||| |||||| ||||||||| || |||||||||||| |||||||||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  288 atccttaaaacttga 302  Q
     ||||||||||||||    
T  53761716 ctccttaaaacttga 53761702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 1519227 - 1519144
Alignment:
Q  150 tttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    |||||||||| ||| |||||||  ||||||||  |||| |||||||||||||| ||||| | ||||||||||||||||||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcatt 1519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 324
Target Start/End: Original strand, 659707 - 659900
Alignment:
Q  132 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    |||| |||| ||||| || ||||||||| |||  ||| ||||| || |||  |||| |||||||||||||| ||||| | ||||||||||||||| || |    
T  659707 aaaaccccaaaacaattccttgagatcacata--gtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaaattta 659804  T
Q  232 tttctagt---ttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgc 324  Q
    || || ||   ||| || |||||||   || |||||| |||| |||||||||||||||| ||||||||| |||| | ||| |||||||||| ||||    
T  659805 ttactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgttacaacatctccttaaaatttgaccaatatcttcttcagaaatgc 659900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 303
Target Start/End: Original strand, 640843 - 641085
Alignment:
Q  64 tgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatata 163  Q
    ||||||||||||| ||||| ||||||||||||||||| | || || ||||| ||   || |||  | |||||| ||||  ||| |||||||| |||  ||    
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  164 aagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttctagt---ttcactgttgaacactgggat 260  Q
     |||| ||||||||||||  |||| | |||||||||||| ||||||||| | || | |||||| |||||| | |||   || |||     |||   || |    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtaggtttactccatcacaaccggct 641042  T
Q  261 aagttcaaatgtctaatgttacaacatatccttaaaacttgaa 303  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  641043 aagttcaaatgtctaacattacaacatatccttaaaacttgaa 641085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 570346 - 570517
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||| | |||||||||||| |||| ||| ||| |||| | |||||||  ||| | |||||||||||| ||||| | |||| ||||||||||||||    
T  570346 caaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttc 570445  T
Q  231 atttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    | | |    ||||||||| |||| || || | |||||||||||| ||||  |||||||||   ||||||||||||    
T  570446 aatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagtttacaacat---cttaaaacttga 570517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 1513511 - 1513409
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||| ||||| ||||||||| |  || |||| ||||||||||||  ||||   |||||||||||| || || | |||||||||||||||||||    
T  1513511 caaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttc 1513412  T
Q  231 att 233  Q
    |||    
T  1513411 att 1513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 1517472 - 1517408
Alignment:
Q  259 ataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    |||||| ||||||| | || ||||||||| |||||||||| ||| ||||||||||||||||||||    
T  1517472 ataagtccaaatgtgtcatcttacaacatctccttaaaacatgatcgataccttcttcagatatg 1517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 6006455 - 6006518
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    |||||||||||||||||| |||| |||| |||||||||||||| | | |||||| |||||||||    
T  6006455 taagttcaaatgtctaatcttactacatttccttaaaacttgagcaacaccttcatcagatatg 6006518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 566316 - 566354
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaac 298  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  566316 taagttcaaatgtgtaatgttacaacatatccttaaaac 566354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 12121561 - 12121459
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||||||||  |||| ||||||||| |   | |||| ||||||||||||  |||| | |||||||||||| || || | |||||||||||||||||||    
T  12121561 caaaagcccacggcaacactttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttc 12121462  T
Q  231 att 233  Q
    |||    
T  12121461 att 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 558493 - 558542
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaa 180  Q
    ||||||||||| ||||||||||||||||| ||  ||||||||||||||||    
T  558493 caaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 1537961 - 1537769
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    |||||| |||| ||| ||||| ||||| |||||||  |||| |||||||||||||| ||||| |  || ||||  ||   || | | || ||||||||||    
T  1537961 caaattgatctctcttagttgagtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagccca 1537862  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    | ||||| ||||||||| | | | |||| ||  |||| |||  |||| | |||||||||||| || || | ||||||||||||||||||||||    
T  1537861 cgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1537769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 1552871 - 1552771
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||| |||| ||||||| |||| ||  |||| |||||||| ||   |||| |||||||| ||||| || |||| |||||||| ||||||||||    
T  1552871 caaaagcccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttc 1552772  T
Q  231 a 231  Q
    |    
T  1552771 a 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 12116645 - 12116577
Alignment:
Q  165 agtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    |||| ||||||||||||  |||| |||||||||||||| ||||| || || ||||| ||||||||||||    
T  12116645 agtgattcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcatt 12116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 1495894 - 1495831
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    ||||| ||||||| | || ||||||||| |||||||||| ||| | ||||||||||||||||||    
T  1495894 taagtccaaatgtgtcatcttacaacatctccttaaaacatgaccaataccttcttcagatatg 1495831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 1533962 - 1533899
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    ||||||||||||| | || ||||||||| |||||||||| |||   ||||||||||||||||||    
T  1533962 taagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatg 1533899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 1545796 - 1545871
Alignment:
Q  159 atataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcattt 234  Q
    |||||||||| ||||||||||||| ||||     |||||||||| ||||||| ||| ||||||| |||||||||||    
T  1545796 atataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcattt 1545871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 8184002 - 8183887
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattg 359  Q
    ||||||||||| |||||| | ||||||  ||||||||| ||||   ||||||| |||||| |||  | | ||||  |||||||||||| |||||||||||    
T  8184002 taagttcaaatctctaatctcacaacaactccttaaaatttgagtaatacctttttcagaaatgtcaaagcaatgactcaaatcaagccgctgcaaattg 8183903  T
Q  360 gagaagatggaagcaa 375  Q
    | ||| | ||||||||    
T  8183902 gggaacacggaagcaa 8183887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 6006255 - 6006304
Alignment:
Q  64 tgcagttttctactacatgcttcactcccttctttgtgatatcattacaa 113  Q
    ||||||||||||| || ||| |||||||||||||||||| ||||| ||||    
T  6006255 tgcagttttctacgacttgcatcactcccttctttgtgacatcataacaa 6006304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 233
Target Start/End: Original strand, 532186 - 532286
Alignment:
Q  133 aaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcat 232  Q
    ||||| ||| |||| |||||||| ||| ||||||   |||||||||||   |||| | |||||||||||| ||||| |  ||||| ||||||||||||||    
T  532186 aaagctcacgacaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcat 532285  T
Q  233 t 233  Q
    |    
T  532286 t 532286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 270
Target Start/End: Complemental strand, 55505212 - 55505070
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||| |||| |||| |||||||| ||| |||||||| | |||| |||||  |||| | |||||||||||| ||||| | || ||| |||  |||||||    
T  55505212 caaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggggactctaaagttc 55505113  T
Q  231 atttc---tagtttcactgttgaacactgggataagttcaaat 270  Q
    ||| |   ||| |||||||||||||| | || || ||||||||    
T  55505112 attccaattaggttcactgttgaacagtaggctaggttcaaat 55505070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 302
Target Start/End: Complemental strand, 51113974 - 51113711
Alignment:
Q  42 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccac 141  Q
    |||||||||| ||| ||||  ||||| |||||||| ||||||||||||||||||| ||||| ||  | ||||||||   || ||| || |||||||||||    
T  51113974 aaattaatctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccac 51113875  T
Q  142 aacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tag 238  Q
    |||||||||| ||||||| ||| |||| |||||||||||| ||||| | ||||||||  || ||||||| ||||||| |||||||||||||| |   |||    
T  51113874 aacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtag 51113775  T
Q  239 tttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
     |||| | ||||||| |  | ||| |||||||| ||||| ||||||||| || |||||||||||    
T  51113774 cttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttga 51113711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 123 - 298
Target Start/End: Complemental strand, 51121005 - 51120827
Alignment:
Q  123 gacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaactt 222  Q
    ||||||| ||||||||||| ||||||||||||||| | ||| |||  ||||||||||||| |||| || ||||||||||| |||||||||||| ||||||    
T  51121005 gacaattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaactt 51120906  T
Q  223 caaagttcatt---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaac 298  Q
    |||||||||||   |  ||||||||| |||||||   ||  |||||||| |||||||||||||||||| ||| ||||||    
T  51120905 caaagttcattccatgcagtttcactcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaac 51120827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 13470836 - 13470662
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||||||||||||| |||||||||||||||| |||| || ||||| |||  |||| | |||||||||||| |||||||  ||||||||  ||||||||    
T  13470836 caaaagcccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttc 13470737  T
Q  231 atttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    ||| |   ||| |||||| ||  ||| | || |||||||||||| ||||| ||||||||||||||||||||||||    
T  13470736 attccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttga 13470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 1657378 - 1657437
Alignment:
Q  264 ttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatatg 1657437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 375
Target Start/End: Complemental strand, 51764544 - 51764300
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||| |||||| |||||||||||  ||| |||| || |||||||||| ||||   ||||||||  || |||||||  || |||||| ||||||||    
T  51764544 caaaagcccgcaacaattctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttc 51764445  T
Q  231 atttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgac 327  Q
    ||| |   ||| |||||| ||||||| | ||||| ||||||||| ||||| ||| ||||| |||||||||||| |  || ||   ||| ||||||||||     
T  51764444 attccaagtagcttcactcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaacttcacagacac---ctttagatatgcgat 51764348  T
Q  328 aacaattgctcaaatcaagcagctgcaaattggagaagatggaagcaa 375  Q
      |||    | |||||||||||||||||||||| ||| ||||||||||    
T  51764347 tgcaagaattaaaatcaagcagctgcaaattggggaaaatggaagcaa 51764300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 375
Target Start/End: Complemental strand, 514921 - 514585
Alignment:
Q  42 aaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccac 141  Q
    ||||| |||| ||| ||| | ||||||||||  || ||||||||||||||| ||| ||||||| | | |||||||||  || | | || |||||||||||    
T  514921 aaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccac 514822  T
Q  142 aacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcat---ttctag 238  Q
    | |||||||| ||||||| || |||||||||||| || ||| |||| | |   ||| |||| ||||| | |||| |||||  || ||||||    |  |     
T  514821 agcaactcttcgagatcacatgaagtgcttcatcgtcgactcttgtatctattaagctcaacacctcaagtttgagaactctaatgttcataccgtacaa 514722  T
Q  239 tttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctc 338  Q
     |||||| |||| || |||| |||||||||||| ||||| ||| | ||| || |||||||||||  ||||| ||  |||||||||  |  ||||| ||||    
T  514721 cttcactcttgagcagtgggctaagttcaaatgcctaatcttagaccatctctttaaaacttgacagatacttttgtcagatatgttatcacaatagctc 514622  T
Q  339 aaatcaagcagctgcaaattggagaagatggaagcaa 375  Q
    |||||||  ||||||||||| | ||| || |||||||    
T  514621 aaatcaattagctgcaaattcgggaaaattgaagcaa 514585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 1657236 - 1657346
Alignment:
Q  121 gtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaac 220  Q
    |||||| || ||||||||| |  |||||||||||||||  ||| |||| |  ||  |||||| ||||   |||||||| ||| ||||||| |||||||||    
T  1657236 gtgacagttgcaaaagcccgctgcaactctttgagatccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttgggaac 1657335  T
Q  221 ttcaaagttca 231  Q
    |||||||||||    
T  1657336 ttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 57 - 323
Target Start/End: Complemental strand, 1037842 - 1037573
Alignment:
Q  57 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgaga 156  Q
    ||||| ||||||||||| |||||||| ||||| || |||| |||||  |||| ||||||||   |  ||| ||  ||||||||||||||| |||||||||    
T  1037842 agttgtgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgaga 1037743  T
Q  157 tcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcactgttgaaca 253  Q
    ||||||| |||| ||||||||||||   ||| ||||||||||| || ||||| ||||  ||||||| |||||| |||     |||||||||| ||||| |    
T  1037742 tcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaata 1037643  T
Q  254 ctgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
     | || ||| |||||||||||||  ||||||||| |||||||||||| |   ||||||||||||||||||    
T  1037642 gtaggctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatg 1037573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 41 - 229
Target Start/End: Complemental strand, 45245279 - 45245091
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    |||||| |||| | ||||||| ||||| |||||||| ||||| ||||||||||| | ||||| || || ||| ||||    | | | || ||||||||||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagtt 229  Q
    | ||||||||||||||||| ||  |||| |||||||||||| ||||||| |||||| ||||| ||||| | ||| ||||||||||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 32785879 - 32785774
Alignment:
Q  128 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaag 227  Q
    |||||||||||||  | ||||  ||||||||| |||||||||||||||||||| | |||| |||||||||||||| ||||| | ||||||| ||| ||||    
T  32785879 tttcaaaagcccatgaaaacttattgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaag 32785780  T
Q  228 ttcatt 233  Q
    ||||||    
T  32785779 ttcatt 32785774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 361
Target Start/End: Complemental strand, 32785740 - 32785646
Alignment:
Q  264 ttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattgga 361  Q
    |||||||||||||| ||| |||||   ||||||| ||||   ||||||||||||||||||  | | |||| |||||||||||| || |||||||||||    
T  32785740 ttcaaatgtctaatcttagaacat---cttaaaaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattgga 32785646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 41 - 302
Target Start/End: Original strand, 14820598 - 14820862
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    ||||||||||| ||| || || |||||||||| ||| ||||| ||||| ||||||| ||||| ||||||||| |||| | || | |||  ||||||||||    
T  14820598 caaattaatctctctcagctgtgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagccca 14820697  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tcta 237  Q
    |||||| |||| |||||||||||||||| ||||| ||||||  |||| | ||| |||||||| ||||| || ||||||||| ||||||| |||   | ||    
T  14820698 caacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgta 14820797  T
Q  238 gtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    ||||||||  ||||||      ||||||||||||| |||  ||||||||| |||||||| |||||    
T  14820798 gtttcactcctgaacaaaattctaagttcaaatgtttaagcttacaacatttccttaaaccttga 14820862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 321
Target Start/End: Complemental strand, 11936389 - 11936186
Alignment:
Q  121 gtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaac 220  Q
    |||||| || ||||||||||| ||||||||||||||||  ||| |||| || ||| |||||| ||||   |||||||| ||| ||||||| |||||||||    
T  11936389 gtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaac 11936290  T
Q  221 ttcaaagttca---tttctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttca 317  Q
    |||||||||||   |   ||| |||| | |||||||  | | ||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  11936289 ttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttca 11936190  T
Q  318 gata 321  Q
    ||||    
T  11936189 gata 11936186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 321
Target Start/End: Complemental strand, 11948369 - 11948166
Alignment:
Q  121 gtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaac 220  Q
    |||||| || ||||||||||| ||||||||||||||||  ||| |||| || ||| |||||| ||||   |||||||| ||| ||||||| |||||||||    
T  11948369 gtgacagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaac 11948270  T
Q  221 ttcaaagttca---tttctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttca 317  Q
    |||||||||||   |   ||| |||| | |||||||  | | ||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  11948269 ttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttca 11948170  T
Q  318 gata 321  Q
    ||||    
T  11948169 gata 11948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 302
Target Start/End: Original strand, 6394769 - 6395033
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    ||||||||||| ||| | ||| |||||||||||||| ||||| | ||| ||||| | ||||| ||  |||||||| | | ||   |||| ||||||||||    
T  6394769 caaattaatctctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagccca 6394868  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tcta 237  Q
    |||||| |||||||||||| | |||| | ||||||||||||  |||| | |||||||||||| |||||||  | ||||||| |||||||||||   | ||    
T  6394869 caacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgta 6394968  T
Q  238 gtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    |||||||| |||||||    | ||||||||||||| |||  ||||||||| || |||||||||||    
T  6394969 gtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttga 6395033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 302
Target Start/End: Original strand, 6432072 - 6432330
Alignment:
Q  47 aatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaa 146  Q
    ||||||||| | ||| ||||| |||||||| ||| | ||||||||||||| ||||| || || |||||| |   |  | | || || |||||||||||||    
T  6432072 aatctttctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaa 6432171  T
Q  147 ctctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttca 243  Q
     ||||| |||||| |||||||| ||||||||||||  |||| | |||||||||||| |||| ||  |||||||||||||||||||||   | ||| ||||    
T  6432172 ttctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttca 6432271  T
Q  244 ctgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    || ||  ||| | || ||||||||||||| |||  ||||||||| ||||||||||||||    
T  6432272 cttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaacttga 6432330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 14818309 - 14818475
Alignment:
Q  63 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatat 162  Q
    |||||||||||||||||||| ||||| ||||||| ||||| || ||||||||||| | || | |||  |||||||||| ||||| |||| ||||||||||    
T  14818309 gtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcatat 14818408  T
Q  163 aaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagtt 229  Q
    |||||| ||||| ||||||  |||| | ||| |||||||| ||||| || ||| ||||| |||||||    
T  14818409 aaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagtt 14818475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 302
Target Start/End: Original strand, 6402852 - 6403029
Alignment:
Q  128 tttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaag 227  Q
    |||||||||||||| |||| |||||||||||| ||| |||| ||||||||||||  | || | |||||||||||| || || | || ||||||| |||||    
T  6402852 tttcaaaagcccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaag 6402951  T
Q  228 ttcatttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    || ||| |   ||| |||||| ||||||||   | |||||||||||| ||||||||||||||| ||||||||||||||    
T  6402952 tttattccaagtagcttcactcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaacttga 6403029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 300
Target Start/End: Original strand, 6426423 - 6426678
Alignment:
Q  48 atctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaac 147  Q
    |||||||| ||||| |||||||||||||| || || ||||| |||||| |||||| | | |||||||||| | || | |||| ||||| || |||||||     
T  6426423 atctttcttagttgtgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaat 6426522  T
Q  148 tctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcac 244  Q
    |||||||||||  |||||  | |||||||||||   |||| | |||||| ||||| |||||||  | ||||||| |||||||||||   | |||||||||    
T  6426523 tctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcac 6426622  T
Q  245 tgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaactt 300  Q
      |||||||    | ||||||||||||| |||  ||||||||| ||||||||||||    
T  6426623 gtttgaacagaaagctaagttcaaatgtttaagcttacaacatttccttaaaactt 6426678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 9411482 - 9411594
Alignment:
Q  263 gttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaattggag 362  Q
    |||||||||||||||||||| |||| |||||||||| || |  |||||||| | |||||||  ||||||   |||||||||||||||||||||||||| |    
T  9411482 gttcaaatgtctaatgttaccacatctccttaaaacctgcaaaataccttcgttagatatgttacaacatccgctcaaatcaagcagctgcaaattgggg 9411581  T
Q  363 aagatggaagcaa 375  Q
    || ||||||||||    
T  9411582 aaaatggaagcaa 9411594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 298
Target Start/End: Complemental strand, 7994360 - 7994116
Alignment:
Q  57 agttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgaga 156  Q
    |||||||||||||||||||| ||||| |||||||||| ||  || | ||||||||||  || | || | | || |||||| ||| ||||| |||||||||    
T  7994360 agttgcgtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgaga 7994261  T
Q  157 tcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttctagt---ttcactgttgaaca 253  Q
    ||| ||| |||| ||| |||| |||  |||| | ||||| |||||| ||||| |  || |||||| ||||||||||| |||||   |||||| ||| |||    
T  7994260 tcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtaca 7994161  T
Q  254 ctgggataagttcaaatgtctaatgttacaacatatccttaaaac 298  Q
     | || || ||||||||| || || ||||||||| ||||||||||    
T  7994160 atcggctatgttcaaatgcctgatcttacaacatttccttaaaac 7994116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 298
Target Start/End: Complemental strand, 6585341 - 6585171
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||| || |||||||||||||||||| ||| |||| ||||||||||||  |||| | ||||||||||||||||||||| | || ||||  ||||||     
T  6585341 caaaagcgcagaacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagttt 6585242  T
Q  231 atttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaac 298  Q
    ||| |   ||| |||||| ||||||||   |  ||||||||||| ||||| ||| ||||| ||||||||||    
T  6585241 attccaagtagcttcactcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaac 6585171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 7119152 - 7119326
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||| |||||| |||| ||||||| ||  |||| ||||||||||||  | || | |||||||||||| |||||||  | | ||||  ||||||||    
T  7119152 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttc 7119251  T
Q  231 atttctagt---ttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    ||| | |||   |||||| ||||||| |||| ||||||||||||| |||| ||| ||||| ||||||||||||||    
T  7119252 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttga 7119326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 7131630 - 7131804
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||| |||||| |||| ||||||| ||  |||| ||||||||||||  | || | |||||||||||| |||||||  | | ||||  ||||||||    
T  7131630 caaaagcccgcaacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttc 7131729  T
Q  231 atttctagt---ttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    ||| | |||   |||||| ||||||| |||| ||||||||||||| |||| ||| ||||| ||||||||||||||    
T  7131730 attccaagtagcttcactcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaacttga 7131804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 302
Target Start/End: Complemental strand, 6594709 - 6594536
Alignment:
Q  132 aaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    ||||||||||||||| |||||||||||| |   ||||  |||||||||||   ||| | |||||||| ||| ||||||| ||||||||||  |||||| |    
T  6594709 aaaagcccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagttta 6594610  T
Q  232 tttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    || |   ||| |||||| ||||||||  |||||||| ||||||| |||| ||| ||||| ||||||||||||||    
T  6594609 ttccatgtagcttcactcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaacttga 6594536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 6410001 - 6410103
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    |||||||| ||||||| |||||||||||| |||||| | ||||||||||||  |||| | |||| ||||||| |||| ||  ||||||||||||||||||    
T  6410001 caaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttc 6410100  T
Q  231 att 233  Q
    |||    
T  6410101 att 6410103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 12102274 - 12102361
Alignment:
Q  144 caactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttca 231  Q
    ||||||||||| |||| ||| ||| |||| | |||||||  ||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 6589495 - 6589325
Alignment:
Q  63 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatat 162  Q
    |||||||||||||| ||||| |||||||||| ||  |||| || |||||||  |||| |||| |||| || ||||||   |||| | |||||||||| ||    
T  6589495 gtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcagat 6589396  T
Q  163 aaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    | |||| || ||||| |||  |||| | |||||||||||| |||||||   |||||||| |||||||||||    
T  6589395 atagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcatt 6589325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 372
Target Start/End: Original strand, 6415961 - 6416202
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||| | |||| |||||||||||| ||| || | || ||||| |||  |||| | |||||||||||| |||||||  ||||||||| |||||| |    
T  6415961 caaaagcccgctacaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtcc 6416060  T
Q  231 att---tctagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgac 327  Q
    |||   | ||| |||||| ||  |||   || |||||||||||| | ||| |||||||||||| |||||||||||   ||||   ||||||||| | ||     
T  6416061 attccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaatac---cttcagataagagat 6416157  T
Q  328 aacaattgctcaaatcaagcagctgcaaattggagaagatggaag 372  Q
     ||||    |||||||||||||||||||||||| |||| ||||||    
T  6416158 tacaacgattcaaatcaagcagctgcaaattggggaagttggaag 6416202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 10579925 - 10579761
Alignment:
Q  47 aatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttc-aaaagcccacaaca 145  Q
    ||||| ||||||||| |||||||||||||| ||||| || ||||||||||||||||     ||||| ||||   || |  | ||| ||||||| ||||||    
T  10579925 aatctctctaagttgtgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaaca 10579826  T
Q  146 actctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctcca 210  Q
    | |||||||||||  ||| |||| || |||||||||| |||| | |||||||||||| |||||||    
T  10579825 attctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 14802329 - 14802429
Alignment:
Q  129 ttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagt 228  Q
    |||||||| ||||||||| ||||||| |||| ||| |||| ||||||||||||  |||| | |||||| ||||| || ||||  ||||||||||||||||    
T  14802329 ttcaaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagt 14802428  T
Q  229 t 229  Q
    |    
T  14802429 t 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 6423212 - 6423314
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||| ||||||||||||||||||||||  ||| |||| || |||   |||| |||| | |||||||||||| |||||||  |||||||||| |||||||    
T  6423212 caaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttc 6423311  T
Q  231 att 233  Q
    |||    
T  6423312 att 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 19632367 - 19632484
Alignment:
Q  64 tgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatata 163  Q
    ||||||||||||| || || ||||||||||||| |||||||| |  ||||||||   || | | || |||||||||||||||| |||||||||||| | |    
T  19632367 tgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcacaaa 19632466  T
Q  164 aagtgcttcatcatcaac 181  Q
    ||||   |||||||||||    
T  19632467 aagttgctcatcatcaac 19632484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 28935056 - 28935146
Alignment:
Q  143 acaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    |||||||||||| |||| |   ||||||||||| |||||| |||| |||||||||||||| ||||| | || |||||| ||||| ||||||    
T  28935056 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 12097145 - 12097182
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaa 297  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  12097145 taagttcaaatgtgtaatgttacaacatatccttaaaa 12097182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 323
Target Start/End: Complemental strand, 803 - 533
Alignment:
Q  56 aagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgag 155  Q
    |||||| |||||||||||||||||||| ||||| || |||| | |||  |||| ||||||||   || ||| ||  || |||||||||||| |||| |||    
T  803 aagttgtgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgag 704  T
Q  156 atcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcactgttgaac 252  Q
    |||||||| |||| ||||||||| ||  |||| ||||||||||| || ||||| ||||  ||||||| |||||| |||     |||||||||| ||||||    
T  703 atcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaac 604  T
Q  253 actgggataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatg 323  Q
    | | || ||| ||||||||||||   ||||||||| |||||| ||||| |   ||||||||||||||||||    
T  603 agtaggctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatg 533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 302
Target Start/End: Complemental strand, 19468608 - 19468429
Alignment:
Q  126 aatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaa 225  Q
    |||| |||||| ||||||||  |||||||||||| |||||||| ||||||||||||  |||| | |||||| ||||| |||||||  ||||||||| |||    
T  19468608 aattccaaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaa 19468509  T
Q  226 agttcatttc---tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    |||||| | |   ||| |||||| ||||||| |||| |||||| ||||| ||||| ||| ||||  ||||||||||||||    
T  19468508 agttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcctaatattagaacacctccttaaaacttga 19468429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 137 - 233
Target Start/End: Original strand, 52082582 - 52082678
Alignment:
Q  137 cccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| | |||||| |||||||||||| ||||||||||||| ||||| ||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 202
Target Start/End: Original strand, 7554393 - 7554554
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    ||||||||||| | | ||| |||||||||||||||| ||||||||||||||||| | ||||| || || |||   ||   || ||| ||  ||||| |||    
T  7554393 caaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcca 7554492  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaa 202  Q
    | ||||||||||||||||||||| |||||||||||||||||  |||| | ||| ||||||||    
T  7554493 ccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 52092776 - 52092874
Alignment:
Q  135 agcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 233  Q
    ||||||||| ||||||||||||||| ||| | ||  |||||||||| | |||||| || ||||||||| ||||||||||||| ||||| ||||||||||    
T  52092776 agcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcatt 52092874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 373
Target Start/End: Original strand, 7554544 - 7554659
Alignment:
Q  258 gataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaat 357  Q
    ||||||||||||||||||||||||  |||| | |||||||  ||||  |||||||||| |||||||  | | |||||  |||||||||||||||  ||||    
T  7554544 gataagttcaaatgtctaatgttatgacatcttcttaaaatgtgaaaaataccttctttagatatgtcatagcaatttttcaaatcaagcagctctaaat 7554643  T
Q  358 tggagaagatggaagc 373  Q
    |||  |||||||||||    
T  7554644 tgggaaagatggaagc 7554659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 9581193 - 9581310
Alignment:
Q  258 gataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaat 357  Q
    |||| ||||||||||||||| | ||||||| |  |||||||||||   ||||||  || |||||||  ||| |||| || || |||||||||||||||||    
T  9581193 gatatgttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaat 9581292  T
Q  358 tggagaagatggaagcaa 375  Q
    ||| ||| || |||||||    
T  9581293 tggggaaaattgaagcaa 9581310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 29659007 - 29658929
Alignment:
Q  124 acaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaa 202  Q
    |||||| |||||| |||||||||||| |||| || ||||  ||||||| |||||||||| | || | ||||||||||||    
T  29659007 acaattgcaaaaggccacaacaactcgttgatatgatatggagtgctttatcatcaactttggtatatgacaagttcaa 29658929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 9586761 - 9586878
Alignment:
Q  258 gataagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgcgacaacaattgctcaaatcaagcagctgcaaat 357  Q
    |||| ||||||||||||||| | ||||||| |   ||||||||||   ||||||  || |||||||  ||| |||| || || |||||||||||||||||    
T  9586761 gatatgttcaaatgtctaatctgacaacatctttgtaaaacttgacaaatacctcttttagatatgttacagcaatggcacagatcaagcagctgcaaat 9586860  T
Q  358 tggagaagatggaagcaa 375  Q
    ||| ||| || |||||||    
T  9586861 tggggaaaattgaagcaa 9586878  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 7977712 - 7977769
Alignment:
Q  267 aaatgtctaatgttacaacatatccttaaaacttgaacgataccttcttcagatatgc 324  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||    
T  7977712 aaatgtctaatgttacaacatctccttaaaacttgaccaataccttcttcagaaatgc 7977769  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 302
Target Start/End: Original strand, 10614588 - 10614762
Alignment:
Q  131 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttc 230  Q
    ||||||||||| |||  |||| ||||||| ||| |||| || ||||| |||  | || | |||||||||||| |||||||  ||||||||  ||| ||||    
T  10614588 caaaagcccactacagttcttcgagatcacatagagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttc 10614687  T
Q  231 atttctagt---ttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    ||| | |||   |||||| ||  ||| | || |||||||||||| ||||| ||||||||||||||||||||||||    
T  10614688 attccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaacttga 10614762  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 302
Target Start/End: Complemental strand, 15092345 - 15092081
Alignment:
Q  41 caaattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagccca 140  Q
    ||||||||||| ||| | ||| |||||||||||||  ||||| |||||||||   | ||||| || || ||||  || | || | | || ||||||||||    
T  15092345 caaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagccca 15092246  T
Q  141 caacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tcta 237  Q
    |||||| |||||||||||  ||| |||| || ||||| |||  |||| | |||||| ||||| |||||||  | ||||||| |||||||||||   | ||    
T  15092245 caacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaactgcaaagttcattccatgta 15092146  T
Q  238 gtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    |||||||  || ||||    | ||||||||||||| |||  ||| ||||| ||||||||||||||    
T  15092145 gtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatttccttaaaacttga 15092081  T

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Target: scaffold0807 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 302
Target Start/End: Complemental strand, 1560 - 1394
Alignment:
Q  142 aacaactctttgagatcatataaagtgcttcatcatcaacta---ttgtctgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc--- 235  Q
    ||||| |||||||||||| ||| |||| |||||||||| | |   |||| | |||||||| ||| ||||| |  || |||||| |||||||||||||       
T  1560 aacaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaa 1461  T
Q  236 tagtttcactgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaacttga 302  Q
    ||| | ||| | |||||||  || |||||||||||||||||| ||| ||||| ||||||||||||||    
T  1460 taggtccacagatgaacaccaggctaagttcaaatgtctaatcttataacatctccttaaaacttga 1394  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 39091 - 39225
Alignment:
Q  43 aattaatctttctaagttgcgtgcagttttctactacatgcttcactcccttctttgtgatatcattacaattttgaggtgacaatttcaaaagcccaca 142  Q
    ||||||||| ||| |||||||||||||| | ||| ||||| |||||||||||| |||||| |  |  ||| ||||   ||  ||  | |||||||||||     
T  39091 aattaatctctctcagttgcgtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccact 39190  T
Q  143 acaactctttgagatcatataaagtgcttcatcat 177  Q
    ||||||||||||||||| |||||||| ||||||||    
T  39191 acaactctttgagatcacataaagtgtttcatcat 39225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 215
Target Start/End: Original strand, 88803 - 88918
Alignment:
Q  100 tgatatcattacaattttgaggtgacaatttcaaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtctgtgacaagtt 199  Q
    ||||||||  |||||||||  || |||||| ||||||||||  ||| ||||||||||||| ||  ||||||||||| || |  |||||   |||||||||    
T  88803 tgatatcacgacaattttgtagttacaattgcaaaagcccatgacacctctttgagatcacatggagtgcttcatcgtctatgattgttcttgacaagtt 88902  T
Q  200 caatacctccaatttg 215  Q
    ||||||||||| ||||    
T  88903 caatacctccagtttg 88918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 88943 - 88998
Alignment:
Q  260 taagttcaaatgtctaatgttacaacatatccttaaaacttgaacgataccttctt 315  Q
    |||||||||||||||||| ||||||||| |||||||||  ||| | ||||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaatctgatcaataccttctt 88998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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