View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_high_8 (Length: 364)
Name: NF12803_high_8
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 29 - 363
Target Start/End: Original strand, 43069243 - 43069579
Alignment:
| Q |
29 |
cttcaagaggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacnnnnnnncttttgaaattcaatcttgta |
128 |
Q |
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| T |
43069243 |
cttcaagaggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacaaaaaaacttttgaaattcaatcttgta |
43069342 |
T |
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| Q |
129 |
agagctttttgtttcatttcatgcacaaaa-tattgaggaaaatttttaatcgctcatattttttgatgaaatgaaatcttcttaattattatattactt |
227 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43069343 |
agagctttttgtttcatttcatgcacaaaaatattgaggaaaattttgaatcgctcatattttttgatgaaatgaaatcttcttaattattatattactt |
43069442 |
T |
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| Q |
228 |
attctacacgtagatgattgatcacgatgagtgtctcctcactcttatgttttccacatggtgataggatttctagtgtaactgtttggataaaggtgga |
327 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
43069443 |
attctacacgtagatgattgatc---atgagtgtctcctcactcttatgttttccatatggtgatagggtttccagtgtaactgtttggataaaggtgga |
43069539 |
T |
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| Q |
328 |
aatgttagtagta----gtttgttaggtagaaggaaaagg |
363 |
Q |
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||||||||||||| ||||||||||||||||||||||| |
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| T |
43069540 |
aatgttagtagtagtttgtttgttaggtagaaggaaaagg |
43069579 |
T |
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