View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12803_low_1 (Length: 372)
Name: NF12803_low_1
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12803_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 50555539 - 50555877
Alignment:
| Q |
18 |
actctgttatgtttgttcttcatctacgtttaattacaattattattaattaatattgttttaggtccagttgcattcattcagtgaattcttgtgccaa |
117 |
Q |
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| T |
50555539 |
actctgttatgtttgttcttcatctacgtttaattacaattattattaattaatattgttttaggtccagttgcactcattc---------ttgtgccaa |
50555629 |
T |
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| Q |
118 |
acacctggcaggaatcatcaggcaaagtttcaccaaatatgctcagatcttatccttgttacaaaacctcaactatcttattgttttatattttcgttta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50555630 |
acacctggcaggaatcatcaggcaaagtttcaccaaatatgctcagatcttatccttgttacaaaacctcaactatcttattgttttatattttcgttta |
50555729 |
T |
|
| Q |
218 |
tatgctgccaaattaccaaaacaaagctatgatgctatacatgtcaaataaaaaacgatgtaatttctaaaataaaagaaaatgatttcactgacatgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50555730 |
tatgctgccaaattaccaaaacaaagctatgatgctatacatgtcaaataaaaaacgatgtaatttctaaaataaaagaaaatgatttcattgacatgca |
50555829 |
T |
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| Q |
318 |
ctgattgttagagatacacacgagaatgatgtgtatagatagcctttg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50555830 |
ctgattgttagagatacacacgagaatgatgtgtatagatagcctttg |
50555877 |
T |
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