View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12803_low_2 (Length: 286)

Name: NF12803_low_2
Description: NF12803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12803_low_2
NF12803_low_2
[»] chr8 (15 HSPs)
chr8 (226-268)||(11404098-11404140)
chr8 (227-269)||(11610376-11610418)
chr8 (226-268)||(19723408-19723450)
chr8 (226-268)||(27879553-27879595)
chr8 (226-268)||(28019734-28019776)
chr8 (226-268)||(29767283-29767325)
chr8 (226-268)||(11909416-11909458)
chr8 (226-268)||(22711606-22711648)
chr8 (226-268)||(4840237-4840279)
chr8 (226-268)||(36261743-36261785)
chr8 (226-264)||(41553386-41553424)
chr8 (236-268)||(17095647-17095679)
chr8 (232-268)||(32296638-32296674)
chr8 (226-268)||(28739554-28739596)
chr8 (231-268)||(43288169-43288206)
[»] chr7 (15 HSPs)
chr7 (226-268)||(245257-245299)
chr7 (226-268)||(21577091-21577133)
chr7 (226-268)||(35109788-35109830)
chr7 (226-268)||(38265230-38265272)
chr7 (226-268)||(38405147-38405189)
chr7 (226-268)||(41151270-41151312)
chr7 (226-268)||(45278549-45278591)
chr7 (232-268)||(37095209-37095245)
chr7 (226-272)||(12472214-12472260)
chr7 (236-268)||(16059356-16059388)
chr7 (236-268)||(18116947-18116979)
chr7 (232-268)||(28407601-28407637)
chr7 (232-268)||(34721931-34721967)
chr7 (236-268)||(48176497-48176529)
chr7 (232-266)||(39234862-39234896)
[»] chr6 (6 HSPs)
chr6 (226-268)||(35163743-35163785)
chr6 (226-268)||(20685422-20685464)
chr6 (227-268)||(14505519-14505559)
chr6 (231-272)||(17948773-17948814)
chr6 (226-256)||(2711733-2711763)
chr6 (226-264)||(19686820-19686858)
[»] chr5 (5 HSPs)
chr5 (226-268)||(17064420-17064462)
chr5 (231-268)||(20983001-20983038)
chr5 (232-268)||(37976647-37976683)
chr5 (226-268)||(35237052-35237094)
chr5 (232-268)||(41910921-41910957)
[»] chr4 (16 HSPs)
chr4 (226-268)||(2570298-2570340)
chr4 (226-268)||(55231784-55231826)
chr4 (226-268)||(46494391-46494433)
chr4 (226-263)||(51713958-51713995)
chr4 (232-267)||(7173584-7173619)
chr4 (233-268)||(36192638-36192673)
chr4 (226-268)||(29576512-29576554)
chr4 (226-268)||(51066590-51066632)
chr4 (236-276)||(2294719-2294759)
chr4 (232-268)||(22304090-22304126)
chr4 (232-264)||(30970383-30970415)
chr4 (226-272)||(4080545-4080591)
chr4 (226-268)||(32139261-32139303)
chr4 (226-268)||(47626986-47627028)
chr4 (226-268)||(50905845-50905887)
chr4 (236-268)||(51066251-51066283)
[»] chr3 (21 HSPs)
chr3 (226-268)||(50823795-50823837)
chr3 (226-268)||(50852023-50852065)
chr3 (232-276)||(7417887-7417931)
chr3 (226-268)||(773674-773716)
chr3 (226-272)||(19872476-19872522)
chr3 (226-268)||(25910659-25910701)
chr3 (232-268)||(8400952-8400988)
chr3 (232-268)||(37330606-37330642)
chr3 (232-268)||(52545418-52545454)
chr3 (226-268)||(43334047-43334089)
chr3 (232-268)||(22855984-22856020)
chr3 (236-268)||(34824653-34824685)
chr3 (232-268)||(35198862-35198898)
chr3 (236-268)||(55468097-55468129)
chr3 (233-264)||(22371729-22371760)
chr3 (233-268)||(30534902-30534937)
chr3 (226-272)||(358935-358981)
chr3 (226-268)||(39438822-39438863)
chr3 (231-272)||(30203652-30203693)
chr3 (232-261)||(37454743-37454772)
chr3 (232-268)||(25589311-25589347)
[»] chr2 (20 HSPs)
chr2 (226-268)||(2357069-2357111)
chr2 (226-268)||(2754044-2754086)
chr2 (226-268)||(10745225-10745267)
chr2 (226-268)||(17136484-17136526)
chr2 (226-268)||(558432-558474)
chr2 (226-268)||(21637994-21638036)
chr2 (226-268)||(25987654-25987696)
chr2 (226-268)||(26690251-26690293)
chr2 (226-268)||(36380125-36380167)
chr2 (226-268)||(45136963-45137005)
chr2 (232-268)||(2098825-2098861)
chr2 (226-268)||(5039517-5039559)
chr2 (226-268)||(40156137-40156179)
chr2 (232-268)||(33066687-33066723)
chr2 (232-268)||(36836328-36836364)
chr2 (232-268)||(44650490-44650526)
chr2 (233-268)||(13047156-13047191)
chr2 (226-268)||(7860139-7860181)
chr2 (227-264)||(3200982-3201019)
chr2 (236-272)||(4553561-4553597)
[»] chr1 (14 HSPs)
chr1 (226-268)||(12025278-12025320)
chr1 (226-268)||(14498072-14498114)
chr1 (226-268)||(20014555-20014597)
chr1 (226-268)||(22024200-22024242)
chr1 (234-272)||(30850841-30850879)
chr1 (226-268)||(33762533-33762575)
chr1 (230-267)||(45324104-45324141)
chr1 (227-272)||(4573472-4573517)
chr1 (226-267)||(17015218-17015259)
chr1 (226-267)||(35618073-35618114)
chr1 (236-268)||(30054445-30054477)
chr1 (234-268)||(30370061-30370095)
chr1 (226-268)||(33763247-33763289)
chr1 (236-268)||(21090212-21090244)
[»] scaffold0021 (1 HSPs)
scaffold0021 (232-268)||(107691-107726)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 11404140 - 11404098
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11404140 gttacaaaaattttagggtgaggggatggtgccccagtccaag 11404098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 11610418 - 11610376
Alignment:
Q  227 ttacaaaaattttagggtgaggggatggtgccccagtccaaga 269  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11610418 ttacaaaaattttagggtgaggggatggtgccccagtccaaga 11610376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 19723450 - 19723408
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19723450 gttacaaaaattttagggtgaggggatggtgccccagtccaag 19723408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 27879553 - 27879595
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27879553 gttacaaaaattttagggtgaggggatggtgccccagtccaag 27879595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 28019734 - 28019776
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28019734 gttacaaaaattttagggtgaggggatggtgccccagtccaag 28019776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 29767325 - 29767283
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29767325 gttacaaaaattttagggtgaggggatggtgccccagtccaag 29767283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 11909416 - 11909458
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  11909416 gttacaaaatttttagggtgaggggatggtgccccagtccaag 11909458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 22711648 - 22711606
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  22711648 gttacaaaaattttaggatgaggggatggtgccccagtccaag 22711606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 4840279 - 4840237
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  4840279 gttacagaaattttagggtgaggggatggtgccctagtccaag 4840237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 36261785 - 36261743
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  36261785 gttacaaaaattttaaggtgaggggatggtgccccagttcaag 36261743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 41553424 - 41553386
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtc 264  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  41553424 gttacaaaaattttagggtgaggggatggtgctccagtc 41553386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 17095679 - 17095647
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaag 17095647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 32296638 - 32296674
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaag 32296674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 28739554 - 28739596
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| ||||||||||||||||||||||  |||||||||    
T  28739554 gttacaaaatttttagggtgaggggatggtgctgcagtccaag 28739596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 43288206 - 43288169
Alignment:
Q  231 aaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  43288206 aaaaaatttagggtgaggggatggtgctccagtccaag 43288169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 245257 - 245299
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  245257 gttacaaaaattttagggtgaggggatggtgccccagtccaag 245299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 21577091 - 21577133
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21577091 gttacaaaaattttagggtgaggggatggtgccccagtccaag 21577133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 35109830 - 35109788
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35109830 gttacaaaaattttagggtgaggggatggtgccccagtccaag 35109788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 38265230 - 38265272
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  38265230 gttacataaattttagggtgaggggatggtgccccagtccaag 38265272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 38405147 - 38405189
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  38405147 gttacaaaatttttagggtgaggggatggtgccccagtccaag 38405189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 41151312 - 41151270
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  41151312 gttacaaaaaatttagggtgaggggatggtgccccagtccaag 41151270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 45278591 - 45278549
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  45278591 gttacaaaaattttagggtgaggggatggtgctccagtccaag 45278549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 37095209 - 37095245
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaag 37095245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 12472260 - 12472214
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  12472260 gttacacaaagtttagggtgaggggatggtaccccagtccaagacag 12472214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 16059356 - 16059388
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaag 16059388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 18116947 - 18116979
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaag 18116979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 28407637 - 28407601
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaag 28407601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 34721967 - 34721931
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||| ||||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaag 34721931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 48176529 - 48176497
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaag 48176497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 39234896 - 39234862
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtcca 266  Q
    |||||||| ||||||||||||||||||||||||||    
T  39234896 aaaatttttgggtgaggggatggtgccccagtcca 39234862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 35163743 - 35163785
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35163743 gttacaaaaattttagggtgaggggatggtgccccagtccaag 35163785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 20685464 - 20685422
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  20685464 gttacaaaaattttagggtgaagggatggtgccccagtccaag 20685422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 14505519 - 14505559
Alignment:
Q  227 ttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  14505519 ttacaaaaattttagg-tgaggggatggtgccccagtccaag 14505559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 17948814 - 17948773
Alignment:
Q  231 aaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  17948814 aaaaattttaaggtgaggggatggtgtcccagtccaagacag 17948773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 2711733 - 2711763
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtg 256  Q
    |||||||||||||||||||||||||||||||    
T  2711733 gttacaaaaattttagggtgaggggatggtg 2711763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 19686820 - 19686858
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtc 264  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  19686820 gttacagaaattttagggtgaggggatgatgccccagtc 19686858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 17064462 - 17064420
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17064462 gttacaaaaattttagggtgaggggatggtgccccagtccaag 17064420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 20983001 - 20983038
Alignment:
Q  231 aaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||| |||||||||||||||||||||||||||||||||    
T  20983001 aaaatttttagggtgaggggatggtgccccagtccaag 20983038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 37976683 - 37976647
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||| ||||    
T  37976683 aaaattttagggtgaggggatggtgccccagttcaag 37976647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 35237052 - 35237094
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||| ||||||||| |||||||||||||||| |||||||||    
T  35237052 gttacagaaattttagagtgaggggatggtgcctcagtccaag 35237094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 41910957 - 41910921
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaag 41910921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 2570340 - 2570298
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2570340 gttacaaaaattttagggtgaggggatggtgccccagtccaag 2570298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 55231826 - 55231784
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55231826 gttacaaaaattttagggtgaggggatggtgccccagtccaag 55231784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 46494391 - 46494433
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  46494391 gttacaaaatttttagggtgaggggatggtgccccagtccaag 46494433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 51713958 - 51713995
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagt 263  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51713958 gttacaaaaattttagggtgaggggatggtgccccagt 51713995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 7173584 - 7173619
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaa 267  Q
    ||||||||||||||||||||||||||||||||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaa 7173619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 268
Target Start/End: Complemental strand, 36192673 - 36192638
Alignment:
Q  233 aaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaag 36192638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 29576554 - 29576512
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||| |||||||||| ||||||    
T  29576554 gttacaaaaattttagggtgagggggtggtgccccaatccaag 29576512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 51066632 - 51066590
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  51066632 gttacaaattttttagggtgaggggatggtgccccagtccaag 51066590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 2294719 - 2294759
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaagacagtgaa 276  Q
    ||||||||||||||||||||||||||||| ||| |||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaa 2294759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 22304090 - 22304126
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||| ||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaag 22304126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 30970383 - 30970415
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtc 264  Q
    |||||||||||||||||||||||||||||||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtc 30970415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 4080545 - 4080591
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    ||||||||||||||| || ||||||||||||| ||| ||||||||||    
T  4080545 gttacaaaaattttaaggcgaggggatggtgctccaatccaagacag 4080591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 32139303 - 32139261
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||| ||||| |||||||||| |||||||||||||||||||||    
T  32139303 gttataaaaaatttagggtgaagggatggtgccccagtccaag 32139261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 47626986 - 47627028
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    
T  47626986 gttacaaaaattttagggtgaggagatggtgttccagtccaag 47627028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 50905887 - 50905845
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||  ||||||||||||||| ||||    
T  50905887 gttacaaaaattttagggtgaaaggatggtgccccagttcaag 50905845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 51066283 - 51066251
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||| ||||    
T  51066283 ttttagggtgaggggatggtgccccagttcaag 51066251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 50823837 - 50823795
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50823837 gttacaaaaattttagggtgaggggatggtgccccagtccaag 50823795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 50852023 - 50852065
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50852023 gttacaaaaattttagggtgaggggatggtgccccagtccaag 50852065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 7417931 - 7417887
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaagacagtgaa 276  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  7417931 aaaattttagggtgaggggatggtgccccagtccaaggcagtgaa 7417887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 773716 - 773674
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  773716 gttacaaaaattctagggtgaggggatggtgccccagtccaag 773674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 19872476 - 19872522
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||    
T  19872476 gttataaaaattttaggatgaggggatggtgccccagtccaagacag 19872522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 25910659 - 25910701
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  25910659 gttacaaaaattttagggtgaggggatggtgcctcagtccaag 25910701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 8400988 - 8400952
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaag 8400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 37330606 - 37330642
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaag 37330642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 52545454 - 52545418
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaag 52545418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 43334047 - 43334089
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  43334047 gttacaaaatttttagggtgaggggatggtaccccagtccaag 43334089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 22856020 - 22855984
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||| ||||||||||    
T  22856020 aaaattttagggtgaggggatggtgctccagtccaag 22855984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 34824685 - 34824653
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaag 34824653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 35198898 - 35198862
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaag 35198862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 55468129 - 55468097
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  55468129 ttttagggtgaggggatggtgccccagtccaag 55468097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 264
Target Start/End: Original strand, 22371729 - 22371760
Alignment:
Q  233 aaattttagggtgaggggatggtgccccagtc 264  Q
    ||||||||||||||||||||||||||||||||    
T  22371729 aaattttagggtgaggggatggtgccccagtc 22371760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 30534902 - 30534937
Alignment:
Q  233 aaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaag 30534937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 358935 - 358981
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||||| ||||||||||||||||||||||||||  |||| |||||||    
T  358935 gttacataaattttagggtgaggggatggtgccatagtctaagacag 358981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 39438822 - 39438863
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  39438822 gttacaaaaattttagggtga-gggatggtgccccagttcaag 39438863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 30203652 - 30203693
Alignment:
Q  231 aaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||| |||||| ||||||||||||||||||||| ||||||||    
T  30203652 aaaatttttagagtgaggggatggtgccccagttcaagacag 30203693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 37454743 - 37454772
Alignment:
Q  232 aaaattttagggtgaggggatggtgcccca 261  Q
    ||||||||||||||||||||||||||||||    
T  37454743 aaaattttagggtgaggggatggtgcccca 37454772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 25589347 - 25589311
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||| |||||||| |||||||    
T  25589347 aaaattttagggtgaggggagggtgcccccgtccaag 25589311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 2357069 - 2357111
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2357069 gttacaaaaattttagggtgaggggatggtgccccagtccaag 2357111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 2754044 - 2754086
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2754044 gttacaaaaattttagggtgaggggatggtgccccagtccaag 2754086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 10745225 - 10745267
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10745225 gttacaaaaattttagggtgaggggatggtgccccagtccaag 10745267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 17136526 - 17136484
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17136526 gttacaaaaattttagggtgaggggatggtgccccagtccaag 17136484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 558432 - 558474
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  558432 gttacaaaaattttagggtgaggggatggtgccccattccaag 558474  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 21638036 - 21637994
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  21638036 gttacaaaaattttagggtgaggggatggtgccctagtccaag 21637994  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 25987654 - 25987696
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  25987654 gttacaaaaattttagggtgaggggatggtgccccagaccaag 25987696  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 26690293 - 26690251
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  26690293 gttacaaaaattttagggtgaggggatggtgcctcagtccaag 26690251  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 36380125 - 36380167
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  36380125 gttacaaaaattttagggtgaggggatggtgcctcagtccaag 36380167  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 45136963 - 45137005
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  45136963 gttacaaaaattttagggtgaagggatggtgccccagtccaag 45137005  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 2098825 - 2098861
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaag 2098861  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 5039559 - 5039517
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||| ||||||||||||||||| ||||||||    
T  5039559 gttacaaaaattttagagtgaggggatggtgccctagtccaag 5039517  T

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Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 40156179 - 40156137
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  40156179 gttacaaaaattttatggtgaggggatggtgccccagttcaag 40156137  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 33066723 - 33066687
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaag 33066687  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 36836328 - 36836364
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||| |||||||||||||||||||||||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaag 36836364  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 44650526 - 44650490
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||| |||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaag 44650490  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 13047156 - 13047191
Alignment:
Q  233 aaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||| ||||||||||    
T  13047156 aaattttagggtgaggggatggtgctccagtccaag 13047191  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 7860139 - 7860181
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||| ||||||||| |||| |||||||||    
T  7860139 gttacaaaaattttagggagaggggatgatgcctcagtccaag 7860181  T

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Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 3201019 - 3200982
Alignment:
Q  227 ttacaaaaattttagggtgaggggatggtgccccagtc 264  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  3201019 ttacaaaaattttagggcgaggagatggtgccccagtc 3200982  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 4553561 - 4553597
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||||| |||||||||||||||||||||| |||||||    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacag 4553597  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 12025320 - 12025278
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  12025320 gttacaaaaattttagggtgagggggtggtgccccagtccaag 12025278  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 14498072 - 14498114
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  14498072 gttacaaaaattttagggtgaggggatggcgccccagtccaag 14498114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 20014597 - 20014555
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  20014597 gttacaaaaattttagggtgaggggatggtgcctcagtccaag 20014555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 22024242 - 22024200
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaag 22024200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 30850841 - 30850879
Alignment:
Q  234 aattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30850841 aattttagggtgaggggatggtgccccagtccaagacag 30850879  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 33762533 - 33762575
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  33762533 gttacaaaaattttagggtgaggggatgatgccccagtccaag 33762575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 45324141 - 45324104
Alignment:
Q  230 caaaaattttagggtgaggggatggtgccccagtccaa 267  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45324141 caaaaattttagggtgaggggatggtgccccagtccaa 45324104  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 4573517 - 4573472
Alignment:
Q  227 ttacaaaaattttagggtgaggggatggtgccccagtccaagacag 272  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||    
T  4573517 ttacaaaaattttagggtgaggggatagtgcctcagtccaaaacag 4573472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 17015259 - 17015218
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaa 267  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  17015259 gttacataaattttaggatgaggggatggtgccccagtccaa 17015218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 35618114 - 35618073
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaa 267  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  35618114 gttacaaaatttttagggtgaggggatggtaccccagtccaa 35618073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 30054445 - 30054477
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||||||||||||||||||||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaag 30054477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 30370061 - 30370095
Alignment:
Q  234 aattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||| |||||||||||||||||||||||||||    
T  30370061 aattttaaggtgaggggatggtgccccagtccaag 30370095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 33763247 - 33763289
Alignment:
Q  226 gttacaaaaattttagggtgaggggatggtgccccagtccaag 268  Q
    |||||| ||||||||||||||||||||| ||||||||| ||||    
T  33763247 gttacagaaattttagggtgaggggatgatgccccagttcaag 33763289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 21090244 - 21090212
Alignment:
Q  236 ttttagggtgaggggatggtgccccagtccaag 268  Q
    |||||| ||||||||||||||||||||||||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaag 21090212  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 107691 - 107726
Alignment:
Q  232 aaaattttagggtgaggggatggtgccccagtccaag 268  Q
    ||||||||||| |||||||||||||||||||||||||    
T  107691 aaaattttagg-tgaggggatggtgccccagtccaag 107726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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