View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12804_high_3 (Length: 315)
Name: NF12804_high_3
Description: NF12804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12804_high_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 40843377 - 40843667
Alignment:
| Q |
25 |
atgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaaggtgcactgcatagccggtgtcttgccacccgtcata |
124 |
Q |
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| T |
40843377 |
atgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatcccatgaaggtgtactgcataaccggtgtcttgccacccgtcata |
40843476 |
T |
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| Q |
125 |
ctgtgaatgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctgccataaagtcacatcattcggaccgtgcttcata |
224 |
Q |
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| T |
40843477 |
ccgtgaatgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctgccataaagtcacatcattcggaccgtgcttcata |
40843576 |
T |
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| Q |
225 |
acatcgttacataaacaaaaacatcgaatcagcttgtagtcatctgtcacaggtcataatcaaaaccatgaatgttaacaaaagtaggtat |
315 |
Q |
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| T |
40843577 |
acatcgttacataaacaaaaacatcgaatcagcttgtagtcatctgtcacaggtcataatcaaaaccatgaatgttaacaaaagtaggtat |
40843667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 40847702 - 40847795
Alignment:
| Q |
25 |
atgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaaggtgcactgcatagccggtgtcttgccaccc |
118 |
Q |
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| T |
40847702 |
atgataccaacacatgtaccccaaaataatcttcgaagccccacgaatgacacattccatgaaagtaaactgcataaccggtgtcttgccaccc |
40847795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 46502742 - 46502456
Alignment:
| Q |
25 |
atgataccaacatctgttccccaaaataatcttcgtagccccaccaatgacacatccaatgaaggtgcactgcatagccggtgtcttgccacccgtcata |
124 |
Q |
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| T |
46502742 |
atgataccaacacctcatccccaaaataatcttcatagccccaccagtggcacatcccttgcaagtacaccgcataaccagtctcttgccacatgtcagt |
46502643 |
T |
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| Q |
125 |
ctgtgaatgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctgccataaagtcacatcattcggaccgtgcttcata |
224 |
Q |
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| T |
46502642 |
ccaaagatgacttggcatttctacttgaagatccctccaacagttgcttcttaggtcatatatctgccataagatctcatcatttggatcacgcttctcg |
46502543 |
T |
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| Q |
225 |
acatcgttacataaacaaaaacatcgaatcagcttgtagtcatctgtcac-aggtcataatcaaaaccatgaatgttaacaaaagta |
310 |
Q |
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| T |
46502542 |
ggattgtcgaaaaaacaaaaacatcgaatcagcttgtagtcatcggacactgggtcataaccaaaaccatgaatgttaacaatagta |
46502456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 4041563 - 4041627
Alignment:
| Q |
131 |
atgatttggcatttcaacttgaagatccctccaataattactttttaggctataaacctgccata |
195 |
Q |
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| T |
4041563 |
atgatttggcatttcaacttcaagatccctccaactgttactttttaggctatatatctgccata |
4041627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 4041672 - 4041751
Alignment:
| Q |
237 |
aaacaaaaacatcgaatcagcttgtagtcatctgtcacagg-tcataatcaaaaccatgaatgttaacaaaagtaggtat |
315 |
Q |
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| T |
4041672 |
aaacaaaaatatcgaattaacttgtagtcatctgtgacaggatcataaccaaacccgtgaatgttaatgaaagtatgtat |
4041751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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