View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12804_low_1 (Length: 219)
Name: NF12804_low_1
Description: NF12804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12804_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 197
Target Start/End: Complemental strand, 4525637 - 4525453
Alignment:
| Q |
12 |
caaaggtaaaatatcaaattccttaggaaggaaggtgtaagccgtaaagaatggggtaacaaggacaggcatggtgtcacttccaatgtaagcctaatgt |
111 |
Q |
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| T |
4525637 |
caaaggtaaaatatcaaattccttaggaaggaaggtgtaagccgtaaagaatggggtaacaaggacaggcatggtgtcacttccaatgtaagcctaa-gt |
4525539 |
T |
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| Q |
112 |
ttgaaacgacacaaaagataaagaattctcctccgacgccatgaattggcttttgttttgtcatatacctagctaaaggtataacc |
197 |
Q |
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| T |
4525538 |
ttgaaacgacacaaaagataaagaattctcctccgacgccatgaattggcttttgttttgtcatatacctagctaaaggtataacc |
4525453 |
T |
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