View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12805_low_1 (Length: 539)
Name: NF12805_low_1
Description: NF12805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12805_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 42 - 525
Target Start/End: Complemental strand, 22439778 - 22439295
Alignment:
| Q |
42 |
attttgttctgatctgcacctatgaattgtttattcttacaatgctgcttcatttctgtcaatcaggtcctaatcgtagtttatccattcctttggttca |
141 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22439778 |
attttgttctgatctgtacctataaattgtttattcttacaatgctgcttcatttctgtcaatcaggtcgtaatcgtagtttatccattcctttggttca |
22439679 |
T |
|
| Q |
142 |
aactatacttgcatctgttcaagcagcggcgttcaaaactttataaacgccatgacaagaaaagagcataaggagcattattcttggtttttgttagaag |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22439678 |
aactatacttgcatctgttcaagcagcggcgttcaaaactttataaacgccgtgacaagaaaagagcataaggagcattattcttggtttttgttagaag |
22439579 |
T |
|
| Q |
242 |
acttgtagacgacaactttctgtttaaccggagaactgattctgaaatttatttgaatctaaaatatttcctttgattggataacaattgtatgaaataa |
341 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22439578 |
acttgtagacgacaactttctgttccaccggagaactgattctgaaatttatttgcatctaaaatatttcctttgattggataacaattgtacgaaataa |
22439479 |
T |
|
| Q |
342 |
tggaattgttgttgtcagtaacgattaagattttaggaactggaagatttgtaacagtgcctgcattattctgcacagatttctaccttatggattttga |
441 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22439478 |
tggaattgttgttgtcagtaacgattaagattttaggaactggaagatttgtaacagtgcctgcattattctgcacagatttctaccttatggattttga |
22439379 |
T |
|
| Q |
442 |
taggactctagggcctagtaacaatgtcaccctaagcctgtatttgaagagtttatttcattgtagtatatatgtatgcctttg |
525 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22439378 |
taggactctagggcctagtaacaatgtcaccctaagcctgtatttaaagagtttatttcattgtagtatatatgtatgcctttg |
22439295 |
T |
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