View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12806_high_1 (Length: 614)

Name: NF12806_high_1
Description: NF12806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12806_high_1
NF12806_high_1
[»] chr7 (29 HSPs)
chr7 (76-196)||(26565323-26565443)
chr7 (76-193)||(22687042-22687159)
chr7 (77-192)||(4574968-4575083)
chr7 (76-193)||(39182393-39182510)
chr7 (110-178)||(1977800-1977868)
chr7 (76-185)||(11325223-11325332)
chr7 (114-178)||(17741896-17741960)
chr7 (110-181)||(14055506-14055577)
chr7 (110-181)||(14365534-14365605)
chr7 (76-170)||(5058788-5058882)
chr7 (110-196)||(8343611-8343697)
chr7 (76-192)||(17811586-17811702)
chr7 (110-181)||(8329788-8329859)
chr7 (130-181)||(8329873-8329924)
chr7 (110-193)||(21846256-21846339)
chr7 (117-159)||(7307203-7307245)
chr7 (115-153)||(17809006-17809044)
chr7 (110-168)||(27221676-27221734)
chr7 (109-181)||(7730167-7730239)
chr7 (110-170)||(8304346-8304406)
chr7 (130-181)||(8346360-8346411)
chr7 (129-192)||(21157521-21157584)
chr7 (116-178)||(48621470-48621532)
chr7 (115-168)||(9685108-9685161)
chr7 (76-157)||(10285678-10285759)
chr7 (137-170)||(23618265-23618298)
chr7 (133-193)||(4247593-4247653)
chr7 (116-192)||(5715523-5715599)
chr7 (122-170)||(26340194-26340242)
[»] chr3 (30 HSPs)
chr3 (76-193)||(3449085-3449202)
chr3 (76-193)||(17064544-17064661)
chr3 (110-193)||(27676673-27676756)
chr3 (76-181)||(41671428-41671533)
chr3 (76-193)||(25870097-25870214)
chr3 (76-192)||(28746014-28746130)
chr3 (122-185)||(28136007-28136070)
chr3 (116-192)||(8592214-8592290)
chr3 (110-186)||(9152794-9152870)
chr3 (110-170)||(20766710-20766770)
chr3 (119-193)||(6136387-6136461)
chr3 (74-166)||(13006089-13006180)
chr3 (109-192)||(8560265-8560348)
chr3 (122-193)||(13286181-13286252)
chr3 (110-193)||(22137514-22137597)
chr3 (76-178)||(15515033-15515135)
chr3 (76-193)||(10872490-10872607)
chr3 (129-186)||(17796809-17796866)
chr3 (129-186)||(19105249-19105306)
chr3 (118-170)||(3041483-3041535)
chr3 (118-170)||(22971069-22971121)
chr3 (110-193)||(21963668-21963751)
chr3 (110-193)||(21986104-21986187)
chr3 (109-192)||(24620005-24620088)
chr3 (111-181)||(8155939-8156009)
chr3 (110-192)||(27090680-27090762)
chr3 (110-164)||(30727668-30727722)
chr3 (133-170)||(18014251-18014288)
chr3 (117-162)||(52519839-52519884)
chr3 (109-165)||(19348818-19348874)
[»] chr5 (15 HSPs)
chr5 (122-196)||(24648243-24648317)
chr5 (76-192)||(43005634-43005750)
chr5 (110-169)||(27339996-27340055)
chr5 (110-192)||(18843953-18844035)
chr5 (129-192)||(17624839-17624902)
chr5 (110-193)||(19377840-19377923)
chr5 (138-192)||(23172265-23172319)
chr5 (110-196)||(43235102-43235188)
chr5 (118-170)||(15051914-15051966)
chr5 (110-170)||(22645536-22645596)
chr5 (138-186)||(38158101-38158149)
chr5 (117-156)||(15446408-15446447)
chr5 (118-168)||(41427681-41427731)
chr5 (109-150)||(29270303-29270344)
chr5 (76-140)||(19979858-19979922)
[»] chr6 (22 HSPs)
chr6 (115-192)||(20432407-20432484)
chr6 (76-193)||(30912181-30912298)
chr6 (110-192)||(11327371-11327453)
chr6 (110-180)||(23506092-23506162)
chr6 (89-181)||(2912049-2912141)
chr6 (80-173)||(23898067-23898160)
chr6 (110-192)||(19748571-19748653)
chr6 (116-192)||(15527925-15528001)
chr6 (110-192)||(7223753-7223835)
chr6 (137-186)||(20981363-20981412)
chr6 (97-178)||(31407561-31407642)
chr6 (110-181)||(7621783-7621855)
chr6 (115-191)||(17543544-17543620)
chr6 (133-192)||(7918182-7918241)
chr6 (133-192)||(27890624-27890683)
chr6 (117-156)||(31108351-31108390)
chr6 (80-181)||(33592930-33593030)
chr6 (109-173)||(3573708-3573772)
chr6 (130-186)||(4841658-4841714)
chr6 (97-181)||(20399871-20399954)
chr6 (76-192)||(22498215-22498331)
chr6 (110-170)||(27614465-27614525)
[»] chr1 (22 HSPs)
chr1 (76-193)||(41032548-41032665)
chr1 (76-173)||(12513528-12513625)
chr1 (78-193)||(32881557-32881672)
chr1 (78-181)||(47786107-47786209)
chr1 (110-192)||(39845064-39845146)
chr1 (109-181)||(16434758-16434830)
chr1 (110-170)||(25146577-25146637)
chr1 (129-193)||(21242855-21242919)
chr1 (110-192)||(19009757-19009839)
chr1 (110-196)||(30619176-30619261)
chr1 (107-165)||(42179877-42179935)
chr1 (133-186)||(17055751-17055804)
chr1 (110-193)||(21846083-21846166)
chr1 (116-165)||(9321550-9321599)
chr1 (110-166)||(9954842-9954898)
chr1 (110-170)||(13100450-13100510)
chr1 (133-192)||(23528894-23528953)
chr1 (110-192)||(14074292-14074374)
chr1 (133-170)||(16125287-16125324)
chr1 (109-181)||(9128646-9128718)
chr1 (118-170)||(17197346-17197398)
chr1 (114-170)||(27502168-27502224)
[»] chr4 (22 HSPs)
chr4 (110-194)||(37240475-37240559)
chr4 (110-181)||(6346764-6346835)
chr4 (115-193)||(8010950-8011028)
chr4 (119-186)||(10394854-10394921)
chr4 (76-192)||(7452744-7452859)
chr4 (117-193)||(10143137-10143213)
chr4 (113-192)||(8743577-8743656)
chr4 (110-192)||(5361774-5361856)
chr4 (110-172)||(7045202-7045264)
chr4 (76-170)||(9770372-9770466)
chr4 (76-181)||(18459406-18459511)
chr4 (110-186)||(5943068-5943144)
chr4 (110-186)||(4157271-4157350)
chr4 (110-186)||(4157558-4157637)
chr4 (76-181)||(8889466-8889570)
chr4 (79-154)||(46664152-46664227)
chr4 (133-193)||(55476225-55476285)
chr4 (116-170)||(5375925-5375979)
chr4 (150-192)||(5884129-5884171)
chr4 (110-192)||(13023796-13023878)
chr4 (136-193)||(7045000-7045057)
chr4 (115-168)||(13551486-13551539)
[»] chr2 (20 HSPs)
chr2 (76-196)||(8428456-8428576)
chr2 (76-192)||(19245827-19245943)
chr2 (122-193)||(13502494-13502565)
chr2 (110-192)||(20063961-20064043)
chr2 (119-193)||(27407028-27407103)
chr2 (121-181)||(15627993-15628053)
chr2 (118-192)||(974576-974651)
chr2 (109-192)||(1405021-1405104)
chr2 (119-193)||(16767022-16767097)
chr2 (109-192)||(31237784-31237867)
chr2 (115-193)||(19262130-19262208)
chr2 (110-170)||(34167548-34167609)
chr2 (110-170)||(15588664-15588724)
chr2 (118-170)||(20034039-20034091)
chr2 (118-170)||(27523913-27523965)
chr2 (133-196)||(25538977-25539040)
chr2 (133-196)||(36430082-36430145)
chr2 (113-193)||(35565766-35565849)
chr2 (118-170)||(7302042-7302094)
chr2 (110-166)||(19492132-19492188)
[»] scaffold0603 (1 HSPs)
scaffold0603 (119-181)||(8777-8839)
[»] scaffold0042 (1 HSPs)
scaffold0042 (80-193)||(93483-93597)
[»] scaffold0534 (1 HSPs)
scaffold0534 (92-181)||(919-1008)
[»] chr8 (20 HSPs)
chr8 (92-181)||(17566347-17566436)
chr8 (76-193)||(17647234-17647351)
chr8 (110-181)||(6811068-6811139)
chr8 (76-181)||(29384087-29384192)
chr8 (110-193)||(24056379-24056462)
chr8 (110-196)||(15231855-15231941)
chr8 (78-162)||(11973942-11974026)
chr8 (110-169)||(2040380-2040439)
chr8 (110-193)||(22910012-22910095)
chr8 (76-166)||(11879864-11879954)
chr8 (76-166)||(11897280-11897370)
chr8 (110-192)||(24414096-24414178)
chr8 (110-192)||(45403267-45403349)
chr8 (110-192)||(26574926-26575008)
chr8 (136-193)||(15294906-15294963)
chr8 (136-193)||(15475275-15475332)
chr8 (128-170)||(7489175-7489217)
chr8 (131-193)||(15761188-15761250)
chr8 (133-170)||(27836131-27836168)
chr8 (110-170)||(19704266-19704326)
[»] scaffold0048 (1 HSPs)
scaffold0048 (76-192)||(61089-61205)
[»] scaffold0028 (1 HSPs)
scaffold0028 (76-193)||(145825-145942)
[»] scaffold0150 (1 HSPs)
scaffold0150 (122-193)||(33175-33246)
[»] scaffold0417 (1 HSPs)
scaffold0417 (115-180)||(7269-7334)
[»] scaffold0510 (1 HSPs)
scaffold0510 (113-173)||(16-76)
[»] scaffold0186 (1 HSPs)
scaffold0186 (110-192)||(8679-8761)
[»] scaffold0016 (1 HSPs)
scaffold0016 (110-192)||(56234-56316)
[»] scaffold2084 (1 HSPs)
scaffold2084 (109-170)||(88-149)
[»] scaffold0007 (1 HSPs)
scaffold0007 (117-158)||(220433-220474)
[»] scaffold0182 (1 HSPs)
scaffold0182 (118-186)||(24630-24698)
[»] scaffold0079 (1 HSPs)
scaffold0079 (118-170)||(14743-14795)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 26565323 - 26565443
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||||||| || ||| || ||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  26565323 aaggttgtcaaaattgggatctttcttcaggttaaaagggaagaacaaaaacgaaaatcgtaaaatcgtaatcaaaatcgaaggattttactcaactact 26565422  T
Q  176 tttgtaaaatccatataaaaa 196  Q
    |||||| |||| |||||||||    
T  26565423 tttgtagaatcaatataaaaa 26565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 22687042 - 22687159
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||| ||| | ||||| |||||| ||||  |||||||| ||||||||||| ||||||||||||  || |||||| ||||||||||||||||||| |    
T  22687042 aaggttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatcgagaatcgtaaaatcacaaccaaaattgaagaattttactcaactact 22687141  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  22687142 tttgtagaatcgatataa 22687159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 4575083 - 4574968
Alignment:
Q  77 aggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattt 176  Q
    ||||||||||| ||| ||| || ||| || || |||| |||||| |||||| ||||||||||||||| |||||||||| ||||||| |||||||||| ||    
T  4575083 aggttgtcaaaattgagatttttcttcaggttgaaagggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactactt 4574984  T
Q  177 ttgtaaaatccatata 192  Q
    ||||| |||| |||||    
T  4574983 ttgtagaatcgatata 4574968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 39182510 - 39182393
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | | ||| |||||| || |  |||||||| || |||||||| ||||||||||||| || ||||||||||| |||||||||||||| |    
T  39182510 aaggttgtcaaaatcgtgattttgcttcagttccaaagagaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 39182411  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  39182410 tttgtagaatcgatataa 39182393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 1977868 - 1977800
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 178  Q
    |||||||| || |||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  1977868 aaagagaagagaaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaattattttt 1977800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 185
Target Start/End: Complemental strand, 11325332 - 11325223
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||||||| |||||| |  | ||||||||| ||||||||||| ||||||||||||| || |||| |  |||  ||||||||||||| |    
T  11325332 aaggttgtcaaaattgggatcttgcttcacgtcaaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaatttcaagggttttactcaactact 11325233  T
Q  176 tttgtaaaat 185  Q
    | ||||||||    
T  11325232 tctgtaaaat 11325223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 17741960 - 17741896
Alignment:
Q  114 agaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 178  Q
    |||||||||||||||||||||||||||| | ||||||||| |||| |||||||| ||||| ||||    
T  17741960 agaatagcaaaatcgaaaatcgtaaaattgcaatcaaaattgaaggattttacttaactactttt 17741896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 14055577 - 14055506
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||||  ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  14055577 aaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgta 14055506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 14365605 - 14365534
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||||  ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  14365605 aaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgta 14365534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 5058882 - 5058788
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||| | ||||  || ||| |||| ||||| |||||||||||||| || ||||||||| | |||||||||||||| |||||| ||||    
T  5058882 aaggttgtcaaaatcgggactttacttcagatcaaaagggaatagcaaaatcggaattcgtaaaattgcaatcaaaatcgaaggattttaatcaa 5058788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 8343611 - 8343697
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    |||||||| | |||||| || ||||||||||  | |||||||||||||| |||||||||||||| ||||||| |||  |||||||||    
T  8343611 aaagagaagaacaaaattgacaatcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtagaattgatataaaaa 8343697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 17811702 - 17811586
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||  || ||| || | ||||| ||||||||||||||  | ||||||||||| |||||||||||||  |||||||||||  | |    
T  17811702 aaggttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggact 17811603  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  17811602 tttgtagaatcgatata 17811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 8329788 - 8329859
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||||||| |||||| || |||| |||||| | ||||||||| |||| |||||||||||||| |||||||    
T  8329788 aaagagaataacaaaattgacaatcataaaattgcaatcaaaattgaaggattttactcaactacttttgta 8329859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 8329873 - 8329924
Alignment:
Q  130 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||||||    
T  8329873 aaatcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgta 8329924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 21846256 - 21846339
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||| | ||||||||| |||||| |||||||| || ||||||||||| |||||| ||||||| |||| || |||| ||||||    
T  21846256 aaagaggagagcaaaatcaaaaatcctaaaatcgcaaccaaaatcgaaggattttaatcaactacttttatagaatcgatataa 21846339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 7307245 - 7307203
Alignment:
Q  117 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaaga 159  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  7307245 atagcaaaatcgcaaatcgtaaaatcgcaatcaaaatcgaaga 7307203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 17809006 - 17809044
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaat 153  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17809006 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaat 17809044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 27221734 - 27221676
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 168  Q
    |||||| ||||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  27221734 aaagagtatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactc 27221676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 7730167 - 7730239
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||||||| |||||||||   ||||||||||||| || ||||||||||   ||||||||||||| |||||||    
T  7730167 aaaagagaagagcaaaatcatcaatcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgta 7730239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 8304406 - 8304346
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||| |||||||||||  | ||||||||||  |||||||||||||| |||||||||||    
T  8304406 aaagagagtagcaaaatcgcgactcgtaaaatcacaatcaaaatcgaaggattttactcaa 8304346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 8346360 - 8346411
Alignment:
Q  130 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||||||| |||| |||||||||| ||| |||||||||||||| |||||||    
T  8346360 aaatcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgta 8346411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Original strand, 21157521 - 21157584
Alignment:
Q  129 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||||||  ||||||||| |||| |||||| ||||||| ||||||| |||| |||||    
T  21157521 aaaatcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatata 21157584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 48621470 - 48621532
Alignment:
Q  116 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 178  Q
    |||| ||||||||||||||||||||||| |||  |||| |||  |||||||||||||| ||||    
T  48621470 aataacaaaatcgaaaatcgtaaaatcgcaattgaaattgaaagattttactcaactactttt 48621532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 9685108 - 9685161
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 168  Q
    ||||||||||||| | | ||||||||||| ||| |||||||||| |||||||||    
T  9685108 gaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactc 9685161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 10285678 - 10285759
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaa 157  Q
    |||||||||||| | ||||| || ||| || |  |||||||| || |||||| | ||||||||||||| |||||||||||||    
T  10285678 aaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaatcaacaatcgtaaaatcgcaatcaaaatcgaa 10285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 23618265 - 23618298
Alignment:
Q  137 aaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||| ||||||||||||||||||||||||||    
T  23618265 aaaatcgcaatcaaaatcgaagaattttactcaa 23618298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 4247653 - 4247593
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||| ||||||| || ||| |||||||||||  ||||||||| |||| ||||||    
T  4247653 tcgtaaaatcgcaatcaaattcaaaggattttactcaaggatttttgtagaatcgatataa 4247593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 5715599 - 5715523
Alignment:
Q  116 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||| |||||||  | ||||||||||| |||||||||||| | |||||||||||  | ||||||| |||| |||||    
T  5715599 aatagaaaaatcgggactcgtaaaatcgcaatcaaaatcgagggattttactcaaggacttttgtagaatcgatata 5715523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 26340194 - 26340242
Alignment:
Q  122 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||| ||||| ||||  |||| ||||||||||||||||||||||||||    
T  26340194 aaaatagaaaaacgtattatcgcaatcaaaatcgaagaattttactcaa 26340242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 3449085 - 3449202
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||||||| ||||||||| || |||||||| ||||||||||| ||||||||||||| || ||||||||||  |||||| ||||||| |    
T  3449085 aaggttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaatgattttattcaactact 3449184  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  3449185 tttgtagaatcgatataa 3449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 17064661 - 17064544
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||||||| |||||| || |  ||||| || | ||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |    
T  17064661 aaggttgtcaaaattgggattttgcttcaggtcgaaagaaaagatcaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactact 17064562  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  17064561 tttgtagaatcaatataa 17064544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 27676756 - 27676673
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  27676756 aaagggaagagcaaaatcgaaaatcttaaaatcgcaatcaaaatcgaaagattttactcaactacttttgtaaaatcgatataa 27676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 41671533 - 41671428
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| |||||| || |  |||||||| ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |    
T  41671533 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcgataattgtaaaatcgcaaccaaaatcgaaggattttactcaactact 41671434  T
Q  176 tttgta 181  Q
    ||||||    
T  41671433 tttgta 41671428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 25870097 - 25870214
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | | ||| ||||||||| |  |||||||| || |||||||| ||||||||||||| || ||||||| ||| ||||||||||||||      
T  25870097 aaggttgtcaaaatcgagattttgctttaggtcgaaagagaagagtaaaatcgacaatcgtaaaatcgcaaccaaaatcaaaggattttactcaactaag 25870196  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  25870197 tttgtagaatcgatataa 25870214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 28746130 - 28746014
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||||||  || ||| || |  ||||| |||||||||||||  | ||||||||||| ||||||||||||||||||||||||||  | |    
T  28746130 aaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaact 28746031  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  28746030 tttgtagaatcgatata 28746014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 28136070 - 28136007
Alignment:
Q  122 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaat 185  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||||||| |||||||||||    
T  28136070 aaaatcgagaatcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgtaaaat 28136007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 8592214 - 8592290
Alignment:
Q  116 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  8592214 aatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 8592290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 9152794 - 9152870
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||||||| || |||||| | |||||||||||||||| ||||||||||  |||| ||||||||||||||||| ||||    
T  9152794 aaagagaagagtaaaatcaacaatcgtaaaatcgtaaccaaaatcgaaagatttgactcaactatttttgtagaatc 9152870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 20766710 - 20766770
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||| |||||||||||| | ||||||||||| ||||||||||||| ||||||||||||    
T  20766710 aaagagagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaaaattttactcaa 20766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 6136387 - 6136461
Alignment:
Q  119 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||| ||||||||||||||| |||||||||| ||  |||||||||||||| |||| || |||| ||||||    
T  6136387 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttatagaatcgatataa 6136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 13006180 - 13006089
Alignment:
Q  74 cgaaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 166  Q
    ||||| |||||||| | ||||| ||||||||| |  |||| |||||||||||| |||||||||||||||| ||||||||| |||  |||||||    
T  13006180 cgaagattgtcaaaatcgggat-ttgctttaggtcgaaagggaatagcaaaattgaaaatcgtaaaatcgcaatcaaaattgaatgattttac 13006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 8560265 - 8560348
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||| || |||||||||||| | |||| |||||| |||||||||||||| |||||||||||   |||||||| |||| |||||    
T  8560265 aaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaaggttttttgtagaatcaatata 8560348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 13286252 - 13286181
Alignment:
Q  122 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||| ||| ||||||||||| |||||||||| ||  |||||||||||||| ||||||| |||| ||||||    
T  13286252 aaaatcaaaactcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgtagaatcgatataa 13286181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 22137597 - 22137514
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| |||||||||   ||| ||||||||  || ||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  22137597 aaagagaagagcaaaatcagcaatagtaaaatcacaaccaaaatcaaagaattttactcaactacttttgtagaatcgatataa 22137514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 15515033 - 15515135
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||| ||| | ||||| |||||| || || |||||||  | ||||||||| ||| |||||||| |||  |||||||||| |||||||||||||| |    
T  15515033 aaggttgttaaaatcgggattttgcttcaggttgaaagagatgaccaaaatcgacaattgtaaaatcttaactaaaatcgaagtattttactcaactact 15515132  T
Q  176 ttt 178  Q
    |||    
T  15515133 ttt 15515135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 10872490 - 10872607
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| |  |||| || ||| || | ||||| ||| || |||||| |||||| |||||||| ||||||||| |||| |||||||| ||||| |    
T  10872490 aaggttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatcaaaaatcataaaatcgcaatcaaaattgaaggattttactaaactact 10872589  T
Q  176 tttgtaaaatccatataa 193  Q
    |||| | |||| ||||||    
T  10872590 tttgaagaatcgatataa 10872607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 17796866 - 17796809
Alignment:
Q  129 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  17796866 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 17796809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 19105306 - 19105249
Alignment:
Q  129 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  19105306 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 19105249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 3041535 - 3041483
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  3041535 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 3041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 22971121 - 22971069
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  22971121 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 22971069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 21963751 - 21963668
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| ||||||||||| ||| ||||||||  || ||||||  ||||||||||||||| || |||| || |||| ||||||    
T  21963751 aaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatataa 21963668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 21986187 - 21986104
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| ||||||||||| ||| ||||||||  || ||||||  ||||||||||||||| || |||| || |||| ||||||    
T  21986187 aaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatataa 21986104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 24620005 - 24620088
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||| |||||||||||| |  | | ||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  24620005 aaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggattttactcaaagacttttgtagaatcgatata 24620088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 8155939 - 8156009
Alignment:
Q  111 aagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||||| |||||||| || |||| |||||||| ||  || ||||||| |||||||||||||| |||||||    
T  8155939 aagagaagagcaaaatggacaatcataaaatcgcaactaagatcgaaggattttactcaactacttttgta 8156009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 27090762 - 27090680
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| |||||| ||||| | ||||||||| |||| ||| |||||||||| |||||||||||  | ||||||| |||| |||||    
T  27090762 aaagggaatagaaaaattgcaaatcgtaagatcgcaataaaaatcgaaggattttactcaaggaattttgtataatcgatata 27090680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 30727668 - 30727722
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttt 164  Q
    |||| ||||||||||||||| | || |||||||| |||||||||||| |||||||    
T  30727668 aaagggaatagcaaaatcgagactcctaaaatcgcaatcaaaatcgatgaatttt 30727722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 18014288 - 18014251
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18014288 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 18014251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 52519884 - 52519839
Alignment:
Q  117 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt 162  Q
    ||||||||||||||||| ||||||||| |||| |||| ||||||||    
T  52519884 atagcaaaatcgaaaattgtaaaatcgcaatcgaaatagaagaatt 52519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 19348874 - 19348818
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 165  Q
    ||||| || |||||||||||| | ||||||||||| ||||||||| |||| ||||||    
T  19348874 aaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatggaaggatttta 19348818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 24648317 - 24648243
Alignment:
Q  122 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| |||||||||    
T  24648317 aaaatcgaaaatcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtagaatcaatataaaaa 24648243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 43005634 - 43005750
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| |||||||||||  ||||  ||||| ||| |||||||| ||||||||| ||||||||| |||  |||||||||||||  |    
T  43005634 aaggttgtcaaaatcgggattttgctttagatcgaaaggaaatagaaaattcgaaaattgtaaaatcgcaatcaaaattgaaagattttactcaacttct 43005733  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  43005734 tttgtagaatcgatata 43005750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 27339996 - 27340055
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactca 169  Q
    |||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||    
T  27339996 aaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaatcgaaggattttactca 27340055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 18844035 - 18843953
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||  | ||||||||||| ||||||||||| || |||||||||||  | ||||||| ||||||||||    
T  18844035 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcggagtattttactcaaggacttttgtagaatccatata 18843953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 17624902 - 17624839
Alignment:
Q  129 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||||||| |||||||||| ||  |||||||||||||| |||||| ||||| |||||    
T  17624902 aaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgttaaatcaatata 17624839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 19377923 - 19377840
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||| ||||||||||||||| ||||||||| |   |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  19377923 aaagggaatagcaaaatcgagaatcgtaaatttacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 19377840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 23172265 - 23172319
Alignment:
Q  138 aaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||||||||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  23172265 aaatcgtaatcaaaatcgaagaattttactcaaagacttttgtagaatcgatata 23172319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 43235188 - 43235102
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    |||| |||||||||||||   | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||||||    
T  43235188 aaagggaatagcaaaatcagtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatataaaaa 43235102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 15051914 - 15051966
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  15051914 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 15051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 22645536 - 22645596
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||| |||||||||||| || | ||||||||| | |||||||||||||| |||||||||||    
T  22645536 aaagggaatagcaaaattgagactcgtaaaattgcaatcaaaatcgaaggattttactcaa 22645596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 38158101 - 38158149
Alignment:
Q  138 aaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaactatttttgtagaatc 38158149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 15446447 - 15446408
Alignment:
Q  117 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcga 156  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  15446447 atagcaaaatcgaaactcgtaaaatcgcaatcaaaatcga 15446408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 41427731 - 41427681
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 168  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  41427731 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactc 41427681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 29270344 - 29270303
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaa 150  Q
    ||||||||||| ||||||||||||| |||||||| |||||||    
T  29270344 aaaagagaatatcaaaatcgaaaatagtaaaatcataatcaa 29270303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 19979922 - 19979858
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaa 140  Q
    ||||| |||||| | ||||| |||||| || | ||||||||| ||||||||||| ||||||||||    
T  19979922 aaggtggtcaaaatcgggattttgcttcaggtcaaaagagaagagcaaaatcgacaatcgtaaaa 19979858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 20432407 - 20432484
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||| |||| |||||    
T  20432407 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatata 20432484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 30912181 - 30912298
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | || || |||||| || || |||||||||||||||||||| ||||||||||||  || |||||| |||| |||||| ||||||| |    
T  30912181 aaggttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcgataatcgtaaaatctcaaccaaaattgaaggattttattcaactact 30912280  T
Q  176 tttgtaaaatccatataa 193  Q
    ||||||||||| ||||||    
T  30912281 tttgtaaaatcgatataa 30912298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 11327371 - 11327453
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  11327371 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatata 11327453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 23506162 - 23506092
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgt 180  Q
    |||||||||||||||||||||||| ||||||||  ||| |||||||||| |||||| ||||||||||||||    
T  23506162 aaagagaatagcaaaatcgaaaattgtaaaatcacaattaaaatcgaaggattttagtcaactatttttgt 23506092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 2912049 - 2912141
Alignment:
Q  89 ttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||||| |||||| || || |||||||| ||| ||||||| |||||||||||| ||||| |||| |||| |||||||||||||| |||||||    
T  2912049 ttgggattttgcttcaggttgaaagagaagagcgaaatcgataatcgtaaaatcataatcgaaattgaaggattttactcaactacttttgta 2912141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 23898160 - 23898067
Alignment:
Q  80 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 173  Q
    |||||||| | ||||| |||||| || |  || ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  23898160 ttgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 23898067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 19748653 - 19748571
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  19748653 aaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 19748571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 15527925 - 15528001
Alignment:
Q  116 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||||| || ||| ||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  15527925 aatagcaaaatcggaactcggaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 15528001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 7223835 - 7223753
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||  | ||||||||| | |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  7223835 aaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 7223753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 20981412 - 20981363
Alignment:
Q  137 aaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||||||||||||||||| |||||||||||||||||  ||||||| ||||    
T  20981412 aaaatcgtaatcaaaatcaaagaattttactcaactgcttttgtagaatc 20981363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 31407642 - 31407561
Alignment:
Q  97 ttgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 178  Q
    ||||||||| || |||| ||||| |||||||||||||  |||||||  |||||||||| ||  |||||||||||||| ||||    
T  31407642 ttgctttaggttgaaagggaataacaaaatcgaaaattataaaatcacaatcaaaatcaaaagattttactcaactactttt 31407561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 7621783 - 7621855
Alignment:
Q  110 aaagagaatagcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||| ||||| |||||||||||| || |||||  || |||||||| ||||||||||||||||||| |||||||    
T  7621783 aaagggaataacaaaatcgaaaaatcataaaactgttatcaaaattgaagaattttactcaactacttttgta 7621855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 17543544 - 17543620
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatat 191  Q
    ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||    
T  17543544 gaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatat 17543620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 7918182 - 7918241
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||| | ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  7918182 tcgtaaaattgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcaatata 7918241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 27890683 - 27890624
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||||||||||||| |||| |||||||||||  | ||||||| |||| |||||    
T  27890683 tcgtaaaatcgtaatcaaaattgaaggattttactcaaggacttttgtagaatcgatata 27890624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 31108390 - 31108351
Alignment:
Q  117 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcga 156  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  31108390 atagcaaaatcgtaaatcgtaaaatcgcaatcaaaatcga 31108351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 33592930 - 33593030
Alignment:
Q  80 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttg 179  Q
    |||||||| | ||||| |||||| | ||  |||| ||||| |||||| |||||||||||||| | |||| ||||||||  | |||||||||||| |||||    
T  33592930 ttgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaatcgtaaaattgcaatcgaaatcgaatga-tttactcaactacttttg 33593028  T
Q  180 ta 181  Q
    ||    
T  33593029 ta 33593030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 3573708 - 3573772
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 173  Q
    ||||| |||||||||||||   | ||||||||||| ||||||||||| || | ||||||||||||    
T  3573708 aaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtaggaatttactcaacta 3573772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 4841658 - 4841714
Alignment:
Q  130 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| ||||||| ||||    
T  4841658 aaatcgaaaaatcacaatcaaaatcaaaggattttactcaactacttttgtagaatc 4841714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 20399871 - 20399954
Alignment:
Q  97 ttgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||| ||||| |||| || ||| |||| ||||||| ||||||||  ||| ||||| ||||||||||||||||||  |||||||    
T  20399871 ttgcttcagattgaaag-gattagaaaaaacgaaaattgtaaaatcacaataaaaattgaagaattttactcaacttgttttgta 20399954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 22498215 - 22498331
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||||||  || ||| || |  |||| |||||||||||| |  | ||||||||||| ||||||||| |||  |||||||||||  | |    
T  22498215 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagact 22498314  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  22498315 tttgtagaatcgatata 22498331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 27614465 - 27614525
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||| |||||| |||||||  | ||||||||||  |||||||||||||| |||||||||||    
T  27614465 aaagggaatagtaaaatcgggactcgtaaaatcacaatcaaaatcgaaggattttactcaa 27614525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 41032548 - 41032665
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| || ||| || || |||||||| |||||||| || ||||||||||||| ||  ||||||||||||||||||||||||| |    
T  41032548 aaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaactagt 41032647  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  41032648 tttgtagaatcgatataa 41032665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 12513625 - 12513528
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 173  Q
    |||||||||||| ||||||| |||||| || | ||||||||| ||||||||||| ||| ||||||||| || ||||||| ||| ||||||||||||||    
T  12513625 aaggttgtcaaaattgggattttgcttcaggtcaaaagagaagagcaaaatcgacaattgtaaaatcgcaaccaaaatcaaaggattttactcaacta 12513528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 32881672 - 32881557
Alignment:
Q  78 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttt 177  Q
    |||| ||||| | ||||| |||||| ||||| |||||||| ||||||||||| ||||||||||||| ||   ||||||||| ||||||||||||||  ||    
T  32881672 ggttttcaaaatcgggattttgcttcagattgaaagagaaaagcaaaatcgacaatcgtaaaatcgcaactgaaatcgaaggattttactcaactacgtt 32881573  T
Q  178 tgtaaaatccatataa 193  Q
    |||| |||| ||||||    
T  32881572 tgtagaatcgatataa 32881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 47786209 - 47786107
Alignment:
Q  78 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttt 177  Q
    |||||||||| | ||||| || |||||| || |||||||| ||||||||||| ||||||||||||  || ||||||||||| |||||||||||||| |||    
T  47786209 ggttgtcaaaatcgggatttt-ctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcacaaccaaaatcgaaggattttactcaactacttt 47786111  T
Q  178 tgta 181  Q
    ||||    
T  47786110 tgta 47786107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 39845064 - 39845146
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||||||||||||||||||||||| ||||||| | ||| ||||| |||  |||||||||||||||||||||||| || |||||    
T  39845064 aaagagaatagcaaaatcgaaaattgtaaaattgcaattaaaattgaatgattttactcaactatttttgtaaagtcgatata 39845146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 16434830 - 16434758
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || | |||||||    
T  16434830 aaaagggaatagcaaaatcgaaaatcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttgta 16434758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 25146577 - 25146637
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  25146577 aaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttactcaa 25146637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 21242855 - 21242919
Alignment:
Q  129 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||| ||||||| |||| ||||||    
T  21242855 aaaatcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatcgatataa 21242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 19009757 - 19009839
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||| ||| |||||||||||  | |||||||||||| |||||    
T  19009757 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgtaaaatcgatata 19009839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 30619261 - 30619176
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    |||||||| ||||||||||| ||||||||| ||| ||  |||||||||| |||||||||||||| ||||||| |||| |||| ||||    
T  30619261 aaagagaagagcaaaatcgacaatcgtaaa-tcgcaacaaaaatcgaaggattttactcaactacttttgtagaatcgatatgaaaa 30619176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 42179877 - 42179935
Alignment:
Q  107 ttaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 165  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  42179877 ttaaaagggaatagcataatcgaaactcgtaaaatcgcaatcaaaatcgaaggatttta 42179935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 17055751 - 17055804
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||    
T  17055751 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatc 17055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 21846083 - 21846166
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||| ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  21846083 aaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 21846166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 9321550 - 9321599
Alignment:
Q  116 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 165  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||    
T  9321550 aatagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatttta 9321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 9954842 - 9954898
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 166  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||    
T  9954842 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttac 9954898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 13100510 - 13100450
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||| |||| ||||||||| || ||||||||||| |||||||||| ||| |||||||||||    
T  13100510 aaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggattttactcaa 13100450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 23528953 - 23528894
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  23528953 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 23528894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 14074292 - 14074374
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| |||||||||||| | || || |||||||  |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  14074292 aaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 14074374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 16125287 - 16125324
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  16125287 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 16125324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 9128646 - 9128718
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||| ||||||||||||||  | ||||||||||   ||||||||||||| |||||||| ||  |||||||||    
T  9128646 aaaagggaatagcaaaatcgggactcgtaaaatcacgatcaaaatcgaaggattttactaaaggatttttgta 9128718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 17197346 - 17197398
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||||||| || ||||||||||| ||  |||||||||| |||||||||||    
T  17197346 tagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaa 17197398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 27502168 - 27502224
Alignment:
Q  114 agaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||| ||| | || |||||| | |||||||||||||| |||||||||||    
T  27502168 agaatagcaaaaccgagactcataaaattgcaatcaaaatcgaaggattttactcaa 27502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 37240559 - 37240475
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaa 194  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||    
T  37240559 aaagagaagagctaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatataaa 37240475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 181
Target Start/End: Original strand, 6346764 - 6346835
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||| ||| ||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||||    
T  6346764 aaagggaagagcaaaatcgaaaatcgtaaaatcacaatcaaaatcgaaggattttactcaactacttttgta 6346835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 8010950 - 8011028
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||||||  | ||||||||||| |||||||||||||| ||||||||||||||||||| || |||| ||||||    
T  8010950 gaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaactatttttatagaatcgatataa 8011028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 10394921 - 10394854
Alignment:
Q  119 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    ||||||||| ||||||||||||||| |||||||||||||| | |||||||||||| ||||||| ||||    
T  10394921 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtagaatc 10394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 7452859 - 7452744
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| || |||| |||||| || |  |||| ||| || ||| | |||||||||||||||| |||||||||||||| | |||||||||||| |    
T  7452859 aaggttgtcaaaattaggattttgcttcaggtcgaaagggaagagaaaagttgaaaatcgtaaaatcgcaatcaaaatcgaagga-tttactcaactact 7452761  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  7452760 tttgtagaatcaatata 7452744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 10143213 - 10143137
Alignment:
Q  117 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||  | ||||||||||||| |||||||||||||| |||||| ||||||| ||||||| |||| ||||||    
T  10143213 atagcaaaattaacaatcgtaaaatcgcaatcaaaatcgaaggattttattcaactaattttgtagaatcgatataa 10143137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 8743577 - 8743656
Alignment:
Q  113 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||||  ||||||||||||||  |||||| |||| |||||    
T  8743577 gagactagcaaaatcaaaaatagtaacatcgtaatcaaaatcgaaagattttactcaactacatttgtataatcgatata 8743656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 5361774 - 5361856
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||||||| |||||||| || ||||||||||| | || |||||||||||  ||||||||||||| ||||||| |||| |||||    
T  5361774 aaagagaagagcaaaatagacaatcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatcgatata 5361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 7045264 - 7045202
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaact 172  Q
    |||| ||| ||||||||| |||||| |||||||| |||||||||||||| |||||||||||||    
T  7045264 aaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaact 7045202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 9770466 - 9770372
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||| | ||||  || |||||| |  |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  9770466 aaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 9770372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 18459406 - 18459511
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | | ||| |||||| || || ||||  || ||||||||||| ||||||||||||| ||| |||||||||| |||| ||| ||||| |    
T  18459406 aaggttgtcaaaatcgagattttgcttcaggttgaaaggaaagagcaaaatcgacaatcgtaaaatcgcaattaaaatcgaaggatttgacttaactaat 18459505  T
Q  176 tttgta 181  Q
    ||||||    
T  18459506 tttgta 18459511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 5943068 - 5943144
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||| ||| ||||||||| ||||||||||||||| ||  ||||| |||| |||||||||||||| ||||||| ||||    
T  5943068 aaagggaagagcaaaatcaaaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaatc 5943144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 4157350 - 4157271
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatc---gtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||| ||| ||||||||||||||||   ||||||||| |||||| ||||||  |||||||||||||| ||||||| ||||    
T  4157350 aaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 4157637 - 4157558
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatc---gtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||| ||| ||||||||||||||||   ||||||||| |||||| ||||||  |||||||||||||| ||||||| ||||    
T  4157637 aaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 8889570 - 8889466
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| |||||| || |  |||||||  |||||||| || ||| ||||||||| || ||||||||||| || ||||||||||| |    
T  8889570 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagag-agcaaaattgacaattgtaaaatcgcaaccaaaatcgaaggatcttactcaactact 8889472  T
Q  176 tttgta 181  Q
    ||||||    
T  8889471 tttgta 8889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 46664152 - 46664227
Alignment:
Q  79 gttgtcaaagttgggatattgctttagatt-aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatc 154  Q
    ||||||||| ||||||| |||||| || |  |||||| |||||||||||||||||||| ||||||| ||||||||||    
T  46664152 gttgtcaaaattgggattttgcttcaggtcgaaaaga-aatagcaaaatcgaaaatcggaaaatcgcaatcaaaatc 46664227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 55476285 - 55476225
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  55476285 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 55476225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 5375979 - 5375925
Alignment:
Q  116 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||| |||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  5375979 aatagtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 5375925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 5884129 - 5884171
Alignment:
Q  150 aaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||| |||||||||||||||||||||| |||| |||||    
T  5884129 aaatcgaaggattttactcaactatttttgtagaatcaatata 5884171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 13023878 - 13023796
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||||||||||| || ||||||||||  |||||| || |||  ||||||| |||  | |||||||||||| |||||    
T  13023878 aaagagaatagcaaaatcggaactcgtaaaatcacaatcaagatagaatgattttacccaaggaattttgtaaaatcgatata 13023796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 7045057 - 7045000
Alignment:
Q  136 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| |||||||||||||  |||||||||||||| ||||| | |||| ||||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttgaataatcgatataa 7045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 13551486 - 13551539
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 168  Q
    ||||||||||||| | | ||||||||||| ||| |||||||||| |||||||||    
T  13551486 gaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactc 13551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 8428576 - 8428456
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| ||||||||| |  |||| |||||| |||||| |||||  |||||||| |||||||||||||| ||||| ||||||||||    
T  8428576 aaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaactatt 8428477  T
Q  176 tttgtaaaatccatataaaaa 196  Q
    |||||| |||| |||| ||||    
T  8428476 tttgtagaatcaatatcaaaa 8428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 19245943 - 19245827
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| |||||| |  || |||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||| ||||| |    
T  19245943 aaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaactact 19245844  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  19245843 tttgtagaatcgatata 19245827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 13502494 - 13502565
Alignment:
Q  122 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||| |||| ||||||    
T  13502494 aaaatcgaaaatcgtaaaatcgtaatcaaaattgaaggatattagtcaactatttttgtagaatctatataa 13502565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 20064043 - 20063961
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  20064043 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatata 20063961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 27407103 - 27407028
Alignment:
Q  119 agcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||||||||| |||||| |||| |||||||||| |||||||||||||||||| ||||| | |||| ||||||    
T  27407103 agcaaaatcgaaaaatcgtaatatcgcaatcaaaatccaagaattttactcaactacttttggataatcaatataa 27407028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 15628053 - 15627993
Alignment:
Q  121 caaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    ||||||||||||| ||||||| | ||||||||||||||  ||||||||||||| |||||||    
T  15628053 caaaatcgaaaattgtaaaatggaaatcaaaatcgaaggtttttactcaactacttttgta 15627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 974651 - 974576
Alignment:
Q  118 tagcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  974651 tagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 974576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 1405104 - 1405021
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||| ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  1405104 aaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatata 1405021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 16767097 - 16767022
Alignment:
Q  119 agcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |||| || |||| ||||||    
T  16767097 agcaaaatcgaaaaatcataaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatcgatataa 16767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 31237784 - 31237867
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||| |||||| |||||||  | ||||||||||| |||||| ||||||| |||||||||||  | |||||||||||| |||||    
T  31237784 aaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttgtaaaatcgatata 31237867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 19262130 - 19262208
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||||||  | ||||||||||| |||||||||||||  |||||||||||  | ||||||| |||| ||||||    
T  19262130 gaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttgtagaatcgatataa 19262208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Complemental strand, 34167609 - 34167548
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatc-aaaatcgaagaattttactcaa 170  Q
    |||| ||||||||||||||||||||||||||||| |||| || ||||||  |||||||||||    
T  34167609 aaagggaatagcaaaatcgaaaatcgtaaaatcgcaatctaacatcgaatgattttactcaa 34167548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 15588664 - 15588724
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||| || |||||||| |||| |||||||| || ||||||||||| |||||||||||    
T  15588664 aaagagaaaagaaaaatcgacaatcataaaatcgcaaccaaaatcgaaggattttactcaa 15588724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 20034039 - 20034091
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||| | ||||||||||| ||||||||| |||| |||||||||||    
T  20034039 tagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaa 20034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 27523913 - 27523965
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  27523913 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 27523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 25538977 - 25539040
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| ||||||| |||| |||||||||    
T  25538977 tcgtaaaatcgcaatcaaaattaaaggattttactgaactacttttgtagaatcgatataaaaa 25539040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 36430145 - 36430082
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    ||||||||||| |||||||||||||| || ||||||||  ||||||||| |||| ||| |||||    
T  36430145 tcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtagaatcgataaaaaaa 36430082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 35565766 - 35565849
Alignment:
Q  113 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt---ttactcaactatttttgtaaaatccatataa 193  Q
    ||||| ||||||||||| ||| ||||||||| ||  |||||||||| |||   ||||||||||| ||||||| |||| ||||||    
T  35565766 gagaagagcaaaatcgataattgtaaaatcgcaactaaaatcgaaggattttattactcaactacttttgtagaatcgatataa 35565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 7302094 - 7302042
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||  | ||||||||| | |||||||||||||| |||||||||||    
T  7302094 tagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaa 7302042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 19492188 - 19492132
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 166  Q
    |||||||| | ||||||  |||||||||||| ||||||||||||||| | |||||||    
T  19492188 aaagagaacaacaaaattaaaaatcgtaaaaccgtaatcaaaatcgatggattttac 19492132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 8777 - 8839
Alignment:
Q  119 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  8777 agcaaaatcgaaaatcataaaatcgtaatcaaaatcgaaggattttactcaactacttttgta 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 93483 - 93597
Alignment:
Q  80 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcga-aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 178  Q
    |||||||| || || | |||||| || |||||||| || ||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||| ||||    
T  93483 ttgtcaaaattagggttttgcttcaggttaaaagaaaagagcaaaatcgacaaattgtaaaatcgtaatcaaaatcgaaggattttattcaactactttt 93582  T
Q  179 gtaaaatccatataa 193  Q
    ||| |||| ||||||    
T  93583 gtagaatcgatataa 93597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 1008 - 919
Alignment:
Q  92 ggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||| |||||| || | ||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  1008 ggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgta 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 17566436 - 17566347
Alignment:
Q  92 ggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||| |||||| || | ||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  17566436 ggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgta 17566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 17647351 - 17647234
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||| ||| | ||||| |||||| || |  |||||||  ||||||||||| |||| |||||||| |||||||||||||| |||||||||||||| |    
T  17647351 aaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaatcataaaatcgcaatcaaaatcgaaggattttactcaactagt 17647252  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  17647251 tttgtagaatcgatataa 17647234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 6811139 - 6811068
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 181  Q
    |||||||| ||||||||||| ||||||||||||| || |||||||||||||||||| ||||||| |||||||    
T  6811139 aaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaagaattttaatcaactacttttgta 6811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 29384087 - 29384192
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| | ||||| |||||| || |  ||||| || || |||||||| ||||||||||||| || ||||||||||| |||||||||||||| |    
T  29384087 aaggttgtcaaaatcgggattttgcttcaggtcgaaagaaaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 29384186  T
Q  176 tttgta 181  Q
    ||||||    
T  29384187 tttgta 29384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 24056379 - 24056462
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||| ||| |||||||| ||| ||| |||||| |||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  24056379 aaagggaagagcaaaattgaatatcataaaatggtaatcaaaatcgaaggattttactcaactagttttgtagaatcaatataa 24056462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 15231941 - 15231855
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 196  Q
    |||||||| ||||||||||| ||||||||||||| ||  ||||||| |  |||||||||||||| ||||||| |||| |||||||||    
T  15231941 aaagagaagagcaaaatcgacaatcgtaaaatcgcaactaaaatcgtacgattttactcaactacttttgtagaatcgatataaaaa 15231855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 11973942 - 11974026
Alignment:
Q  78 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt 162  Q
    |||||||||| |  |||| |||| | ||||| ||||||||||||||||||||||||| |||||||| |||| |||| ||||||||    
T  11973942 ggttgtcaaaatcaggattttgcatcagattgaaagagaatagcaaaatcgaaaatcataaaatcgcaatcgaaattgaagaatt 11974026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 2040439 - 2040380
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactca 169  Q
    ||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  2040439 aaagagagtagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttactca 2040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 22910012 - 22910095
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| || |||||||| ||||||||||||| || | |||| |||| |||||| ||||||||||||||| |||| ||||||    
T  22910012 aaagagaagagaaaaatcgacaatcgtaaaatcgcaaccgaaattgaaggattttattcaactatttttgtagaatcgatataa 22910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 11879954 - 11879864
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 166  Q
    |||||||||||| | ||||| || ||| || | ||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||    
T  11879954 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 11897370 - 11897280
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 166  Q
    |||||||||||| | ||||| || ||| || | ||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||    
T  11897370 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11897280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 24414096 - 24414178
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||  | | ||||||||||| |||||||||||||| |||||||||||  ||||||||| |||| |||||    
T  24414096 aaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaatttttgtagaatcgatata 24414178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 45403349 - 45403267
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||  | ||||||| |||| |||||    
T  45403349 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttacttaaagacttttgtagaatcgatata 45403267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 26574926 - 26575008
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    ||||| ||||| ||||| ||| |||||||||||| ||||||||| |||| |||||||  |||||||| |||| ||| ||||||    
T  26574926 aaagacaatagaaaaattgaatatcgtaaaatcgcaatcaaaattgaaggattttacctaactatttatgtagaattcatata 26575008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 15294963 - 15294906
Alignment:
Q  136 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||||||||    
T  15294963 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataa 15294906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 15475332 - 15475275
Alignment:
Q  136 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||||||||    
T  15475332 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataa 15475275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 7489175 - 7489217
Alignment:
Q  128 gaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||| ||||||||| |||||||||||| |||||||||||||    
T  7489175 gaaaattgtaaaatcgcaatcaaaatcgatgaattttactcaa 7489217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 193
Target Start/End: Original strand, 15761188 - 15761250
Alignment:
Q  131 aatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    ||||||||||||| |||  ||||||||| ||||||||||| || ||||||| |||| ||||||    
T  15761188 aatcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtagaatcgatataa 15761250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 170
Target Start/End: Original strand, 27836131 - 27836168
Alignment:
Q  133 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  27836131 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 27836168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 19704266 - 19704326
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||| ||| | |||||||||    
T  19704266 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactcaa 19704326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 61089 - 61205
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    ||||||| |||| | ||||| |||||| || | ||||||||| || |||||  ||||||||||||||  ||||||||||||||||||||||| ||||| |    
T  61089 aaggttgccaaaatcgggattttgcttcaggtcaaaagagaaaagtaaaatttaaaatcgtaaaatcacaatcaaaatcgaagaattttacttaactact 61188  T
Q  176 tttgtaaaatccatata 192  Q
    |||||| |||| |||||    
T  61189 tttgtagaatcgatata 61205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 145942 - 145825
Alignment:
Q  76 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 175  Q
    |||||||||||| ||| ||| |||||| || |  ||||| |||||  ||||||||||||||||||| | |||||||||||||| ||||||||||  || |    
T  145942 aaggttgtcaaaattgagattttgcttcaggtcgaaagaaaatagttaaatcgaaaatcgtaaaatagcaatcaaaatcgaaggattttactcacttact 145843  T
Q  176 tttgtaaaatccatataa 193  Q
    |||||| |||| ||||||    
T  145842 tttgtagaatcgatataa 145825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 33246 - 33175
Alignment:
Q  122 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 193  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||  || ||||||| |||| ||||||    
T  33246 aaaatcgaaaattgtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatataa 33175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 180
Target Start/End: Original strand, 7269 - 7334
Alignment:
Q  115 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgt 180  Q
    ||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| || ||||||    
T  7269 gaatagcaaaatcgagacttgtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgt 7334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 16 - 76
Alignment:
Q  113 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 173  Q
    ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  16 gagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 76  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 192
Target Start/End: Complemental strand, 8761 - 8679
Alignment:
Q  110 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||| |||||||| || ||||||||||| ||||||||| |||| ||||||||||| |||||| ||| |||| |||||    
T  8761 aaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttactcaagtattttcgtagaatcgatata 8679  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 192
Target Start/End: Original strand, 56234 - 56316
Alignment:
Q  110 aaagagaatagcaaaatcgaaa-atcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 192  Q
    |||| ||||||||||||||| | ||| |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  56234 aaagggaatagcaaaatcgagacatc-taaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 56316  T

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Target: scaffold2084 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 149 - 88
Alignment:
Q  109 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    ||||| || |||||||||||  | ||||||||| ||||| |||||||||| |||||||||||    
T  149 aaaagggagtagcaaaatcgggactcgtaaaattgtaattaaaatcgaaggattttactcaa 88  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 220433 - 220474
Alignment:
Q  117 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaag 158  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  220433 atagcaaaatcgaaaatcgtaaaattgcaatcgaaatcgaag 220474  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 24698 - 24630
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 186  Q
    |||||||||||  | ||||||||| |||||||||||| ||  ||||||||||| | |||||||| ||||    
T  24698 tagcaaaatcgggactcgtaaaattgtaatcaaaatcaaaagattttactcaaatttttttgtagaatc 24630  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 14743 - 14795
Alignment:
Q  118 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 170  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||| ||||    
T  14743 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttattcaa 14795  T

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