View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12806_high_2 (Length: 316)
Name: NF12806_high_2
Description: NF12806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12806_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 51006440 - 51006733
Alignment:
| Q |
2 |
gtttgaagctggaggccacaaatggtatacaatatacattatagtatatgtttttgataaaaataatttcatgaatgataattttggttcatttcagaat |
101 |
Q |
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| T |
51006440 |
gtttgaagctggaggccacaaatggtatacaatatacattata---tatgtttttgataaaaataatttcatgaatgataattttggtccatttcagaat |
51006536 |
T |
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| Q |
102 |
gaatatgttaaaaatgtatttatacctcacaggaagttagttttgtacccaagtggaaacaaaagcaagaatgtaaaggatcatatttcactatacttgg |
201 |
Q |
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| T |
51006537 |
gaatatgttaaaaatgtatttatacctcacaggaagttagttttgtacccaagtggaaacaaaagcaagaatgtaaaggatcatatttcactatacttgg |
51006636 |
T |
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| Q |
202 |
cattggaagaatcaagctcacttcatcctggttgggaaatctatgtaaattttaaattgtttttatatgatcacaacaatgacaactacctagttct |
298 |
Q |
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| T |
51006637 |
cattggaagaatcaagctcacttcatcctggttgggaaatctatgtaaattttaaattgtttgtatatgatcaaaacaatgacaactacctagttct |
51006733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 38741167 - 38741023
Alignment:
| Q |
60 |
aaaaataatttcatgaatgataattttggt-tc-atttca----gaatgaatatgttaaaaatgtatttatacctcacaggaagttagttttgtacccaa |
153 |
Q |
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|||||||||||||||||| ||||||||||| || | |||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||||| || |
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| T |
38741167 |
aaaaataatttcatgaattataattttggtctctaattcatagtgaatgaatatgttaaaaatgtgtttaaacctcacaggaagttagttatgtaccaaa |
38741068 |
T |
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| Q |
154 |
gtggaaacaaaagcaagaatgtaaaggatcatatttcactatact |
198 |
Q |
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| T |
38741067 |
gtggaaacaaaagcaagaatgtaaaggattatatttcactatact |
38741023 |
T |
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