View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12806_low_10 (Length: 215)

Name: NF12806_low_10
Description: NF12806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12806_low_10
NF12806_low_10
[»] chr3 (3 HSPs)
chr3 (19-196)||(20614852-20615029)
chr3 (26-84)||(37043446-37043504)
chr3 (19-87)||(7938450-7938519)
[»] chr4 (2 HSPs)
chr4 (19-82)||(862027-862090)
chr4 (19-86)||(47651175-47651242)
[»] chr5 (2 HSPs)
chr5 (19-83)||(5013656-5013720)
chr5 (19-80)||(24255164-24255225)
[»] chr6 (2 HSPs)
chr6 (26-84)||(2694585-2694643)
chr6 (26-84)||(16317669-16317727)
[»] chr1 (2 HSPs)
chr1 (48-84)||(34407279-34407315)
chr1 (31-79)||(50776710-50776758)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 20614852 - 20615029
Alignment:
Q  19 ggaggtagggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtgtcgtatttcgcttgaaatagcattttccttaattta 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20614852 ggaggtggggagaaaaagatggaaatcataaactagtggatgggtgaaatacatgccacatgtgtcgtatttcgcttgaaatagcatttttcttaattta 20614951  T
Q  119 taataagaaacttgatacaacttagttttacacaaattacatgatttgagaatgtactaaattcaaacaaacactaac 196  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20614952 taataagaaacttgaaacaacttagttttacacaaattacataatttgagaatgtactaaattcaaacaaacactaac 20615029  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 37043446 - 37043504
Alignment:
Q  26 gggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtgtc 84  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  37043446 gggagaaaaagatggaaatcataaactaatggatggatggcatacatgccacatgtgtc 37043504  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 7938519 - 7938450
Alignment:
Q  19 ggaggtagggagaaaaagatggaaa-tcataaactagtggatgggtggaatacatgccacatgtgtcgta 87  Q
    |||||| |||||||||| ||||||| || |||| ||||||||| |||| ||||||||||||||| |||||    
T  7938519 ggaggttgggagaaaaatatggaaaatcctaaaatagtggatgagtggcatacatgccacatgtatcgta 7938450  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 862027 - 862090
Alignment:
Q  19 ggaggtagggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtg 82  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  862027 ggaggtggggagaaaaagatggaaatcataaactagtggatgagtgacatacatgccacatgtg 862090  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 47651175 - 47651242
Alignment:
Q  19 ggaggtagggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtgtcgt 86  Q
    ||||| ||||||||||||||| |||||||||| |||||||||| ||  ||||||||||||||||||||    
T  47651175 ggaggaagggagaaaaagatgaaaatcataaaatagtggatggatgacatacatgccacatgtgtcgt 47651242  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 5013656 - 5013720
Alignment:
Q  19 ggaggtagggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtgt 83  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||    
T  5013656 ggaggtggggagaaaaaggtggaaatcatagactagtggatgagtggcatacatgccacatgtgt 5013720  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 24255164 - 24255225
Alignment:
Q  19 ggaggtagggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatg 80  Q
    |||||| | ||||||||||||||||||||||||||||||| | |||| ||||||||||||||    
T  24255164 ggaggtggagagaaaaagatggaaatcataaactagtggacgagtggcatacatgccacatg 24255225  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 2694585 - 2694643
Alignment:
Q  26 gggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtgtc 84  Q
    ||||||||| |||||||||||||||   |||||||||||| ||||||||||||||||||    
T  2694585 gggagaaaatgatggaaatcataaaactgtggatgggtggcatacatgccacatgtgtc 2694643  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 16317669 - 16317727
Alignment:
Q  26 gggagaaaaagatggaaatcataaactagtggatgggtggaatacatgccacatgtgtc 84  Q
    |||||| ||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||    
T  16317669 gggagagaaagatggaaatcataatctaatggatggatggcatacatgccacatgtgtc 16317727  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 34407315 - 34407279
Alignment:
Q  48 aaactagtggatgggtggaatacatgccacatgtgtc 84  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  34407315 aaactagtggatgggtggcatacaagccacatgtgtc 34407279  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 50776758 - 50776710
Alignment:
Q  31 aaaaagatggaaatcataaactagtggatgggtggaatacatgccacat 79  Q
    ||||| ||||||||||| || |||||| ||||||||||||||| |||||    
T  50776758 aaaaacatggaaatcatgaaatagtggttgggtggaatacatgtcacat 50776710  T

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