View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12806_low_2 (Length: 435)
Name: NF12806_low_2
Description: NF12806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12806_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 45 - 417
Target Start/End: Complemental strand, 19316272 - 19315899
Alignment:
| Q |
45 |
aattcattatgtttttatttctgaataaaatgtattcgtta-ttagtatccaatgaacatatgctacttaaatacgataatttgaactgaaattttgttg |
143 |
Q |
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| T |
19316272 |
aattcattatgtttt-atttctgaataaaatgtattcgtttgttagtatccaatgaacatatgctacttaaatacgataatttgaactgaaattttgttg |
19316174 |
T |
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| Q |
144 |
cagtcatatgctactatttagaggaggtggcaaaattcagcttttgaatat-aaacacttcacttnnnnnnnntggacattaccttgaagctttttgaaa |
242 |
Q |
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| T |
19316173 |
cagtcatatgctactatttagaggaggtggcaaaattcagcttttgaatattaaacacttcacttaaaaaaaatggacattaacttgaagctttttgaaa |
19316074 |
T |
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| Q |
243 |
attattgtcaatttcttccattcttgtcatttctccaatttacactgcacccatatacatattcggtttgtaataccttcaattgcagcaaagaagaaac |
342 |
Q |
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| T |
19316073 |
attattgtcaatttctcccattcttgtcatttctccaattcacactgcacccataaacatattcggtttgtaataccttcaattgcagcaaagaagaaac |
19315974 |
T |
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| Q |
343 |
aaactactttccattttcttgatcaaaccactacctcgtttttcttctctaatttcaatgaagaggtctcaagag |
417 |
Q |
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| T |
19315973 |
aaactactttccattttcttgatcaaaccactacctcgtttttcttctctaatttcaatgaagaggtctcaagag |
19315899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 7819778 - 7819719
Alignment:
| Q |
42 |
tttaattcattatgtttttatttctgaataaaatgtattcgttattagtatccaatgaaca |
102 |
Q |
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| T |
7819778 |
tttaattcattctgtttt-atttttgaataaaatgtattcgttgttagtatccaatgaaca |
7819719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 7805473 - 7805412
Alignment:
| Q |
32 |
tacttgttagtttaattcattatgtttttatttctgaataaaatgtattcgttattagtatcc |
94 |
Q |
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| T |
7805473 |
tacttgtgagtttaattcattctgtttt-atttttgaataaaatgtattcgttgttagtatcc |
7805412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 43168638 - 43168594
Alignment:
| Q |
158 |
tatttagaggaggtggcaaaattcagcttttgaatataaacactt |
202 |
Q |
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| T |
43168638 |
tatttagaggaggatgcaaaattcagcttttgaatctgaacactt |
43168594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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