View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12806_low_4 (Length: 299)
Name: NF12806_low_4
Description: NF12806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12806_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 31628911 - 31629192
Alignment:
| Q |
1 |
cttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaaatcaaccatatcaactccatttctcataatgctctc |
100 |
Q |
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| T |
31628911 |
cttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaactcaaccatatcaactccatttctcataatgctctc |
31629010 |
T |
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| Q |
101 |
aggtttgatttcagttcaactcaactttctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaa |
200 |
Q |
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| T |
31629011 |
aggtttgatttcagttcaactcaactttctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaa |
31629110 |
T |
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| Q |
201 |
gacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttttg |
282 |
Q |
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| T |
31629111 |
gacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttttg |
31629192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 31643561 - 31643658
Alignment:
| Q |
182 |
tattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt |
279 |
Q |
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| T |
31643561 |
tattctatgcagaagtgaagacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagcgtttttatatcataattttctggttagtt |
31643658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 31650740 - 31650828
Alignment:
| Q |
188 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtca |
276 |
Q |
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| T |
31650740 |
atgcagaaatgaagacgatgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttctggtca |
31650828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 31654226 - 31654301
Alignment:
| Q |
205 |
atgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttt |
280 |
Q |
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| T |
31654226 |
atgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttcttgtcagttt |
31654301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 31635593 - 31635684
Alignment:
| Q |
188 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt |
279 |
Q |
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| T |
31635593 |
atgcagacgcgatgacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagtatttttatatcataattttttggtcagtt |
31635684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 31654029 - 31654086
Alignment:
| Q |
3 |
tcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatccc |
60 |
Q |
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| T |
31654029 |
tcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtatccc |
31654086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 31650546 - 31650600
Alignment:
| Q |
3 |
tcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtat |
57 |
Q |
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| T |
31650546 |
tcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtat |
31650600 |
T |
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