View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12806_low_8 (Length: 238)
Name: NF12806_low_8
Description: NF12806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12806_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 13199201 - 13199423
Alignment:
| Q |
1 |
aagcacttgtgcaagataaacttcaccattaatgtcatattgtcatgtacctcgaacccatgctccataaaaagggtttcacggtttccaccaggtacta |
100 |
Q |
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| T |
13199201 |
aagcacttgtgcaagataaacttcaccattaatgtcatattgtcatgtacctcgaacccatgctccataaaaagggtttcacggtttccaccaggtacta |
13199300 |
T |
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| Q |
101 |
acatgcaactattgccagcttccaacaaggaaattaaattcttcttatccactgttgtaaaacccaaccatatccatacttgtcttaaaaatggtatgta |
200 |
Q |
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| T |
13199301 |
acatgcaactattgccagcttccaacaaggaaattaaattcttcttatccactgatgtaaaacccaaccatatccatacttgtctcaaaaatggtatgta |
13199400 |
T |
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| Q |
201 |
gaaaacctattaatccataaaac |
223 |
Q |
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| T |
13199401 |
gaaaacctattaatccataaaac |
13199423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 204
Target Start/End: Complemental strand, 30661422 - 30661263
Alignment:
| Q |
45 |
atgtacctcgaacccatgctccataaaaagggtttcacggtttccaccaggtactaacatgcaactattgccagcttccaacaaggaaattaaattcttc |
144 |
Q |
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| T |
30661422 |
atgtacctcacaaccatgttccataaaaagtgtttctctcattccaccaggtactataatgcaactttcaccagctaccaacaaggatattaaatttttc |
30661323 |
T |
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| Q |
145 |
ttatccactgttgtaaaacccaaccatatccatacttgtcttaaaaatggtatgtagaaa |
204 |
Q |
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| T |
30661322 |
ttcgttacatatgaaaaacctaaccatgtccatatttgtcttaaatatggtatgtagaaa |
30661263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 10112716 - 10112770
Alignment:
| Q |
156 |
tgtaaaacccaaccatatccatacttgtcttaaaaatggtatgtagaaaacctat |
210 |
Q |
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| T |
10112716 |
tgtaagacccaaccatgtccatatgtgtcttaaaaatggtgtgtagaacacctat |
10112770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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