View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12807_high_2 (Length: 391)
Name: NF12807_high_2
Description: NF12807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12807_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 372
Target Start/End: Original strand, 38185262 - 38185633
Alignment:
| Q |
2 |
taaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtg |
101 |
Q |
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| T |
38185262 |
taaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtg |
38185361 |
T |
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| Q |
102 |
tagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaatagcacgagctaagtgttcttatataagtggt |
201 |
Q |
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| T |
38185362 |
tagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcacaagctaagtgttcttatataagtggt |
38185461 |
T |
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| Q |
202 |
ggctgtggtgacgttcgaggtgaccaaactctatgtggtact-atgtataattggtggtatagaagtgatttggatattatctttttaacattatttttt |
300 |
Q |
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| T |
38185462 |
gaccgtggtgacgttctaggtgaccaaactctatgtgatactcatgtataattggtggtatagaagtgatttggatattatttttttaacattatttttt |
38185561 |
T |
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| Q |
301 |
ctaacgcccattattttatggaaactcaaatgtgtcccacgtgtttgaaatagatcacatatgaaatgatga |
372 |
Q |
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| T |
38185562 |
ttaacgcccattattttatggaaactcaaatgtgtcccacgtttttgaaatagatcacatatgaaatgatga |
38185633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 38180592 - 38180768
Alignment:
| Q |
1 |
gtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgt |
100 |
Q |
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| T |
38180592 |
gtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgt |
38180691 |
T |
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| Q |
101 |
gtagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaatagcacga |
177 |
Q |
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| T |
38180692 |
gtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacga |
38180768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 38170779 - 38170947
Alignment:
| Q |
2 |
taaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtg |
101 |
Q |
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| T |
38170779 |
taaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttg |
38170878 |
T |
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| Q |
102 |
tagtgggtatgtgatgatgaggaagtggtggttttgcgtcatggtaatggtggcttgtgaaaatgcaat |
170 |
Q |
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| T |
38170879 |
tagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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