View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12808_low_1 (Length: 311)
Name: NF12808_low_1
Description: NF12808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12808_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 14745292 - 14745009
Alignment:
| Q |
12 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatg----gtaactgcagtctagtct |
107 |
Q |
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| T |
14745292 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatgcaatatgcatggtaactgtagtctagtct |
14745193 |
T |
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| Q |
108 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
207 |
Q |
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| T |
14745192 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaacttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
14745093 |
T |
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| Q |
208 |
aacaacaaacagccatccaagcaaattttgtcagataaatcaagcacatatatttgcacttcacagtgtataatgttacaaatgat |
293 |
Q |
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| T |
14745092 |
aacaacaaacagccatccaaggaaattttgtcagataaatcaagcac--atatttgcacttcacaatgtataatgttacaaatgat |
14745009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 127 - 293
Target Start/End: Original strand, 17582163 - 17582327
Alignment:
| Q |
127 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcacaacaacaaacagccatcca |
226 |
Q |
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| T |
17582163 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcacaacaacaaacagccatcca |
17582262 |
T |
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| Q |
227 |
agcaaattttgtcagataaatcaagcacatatatttgcacttcacagtgtataatgttacaaatgat |
293 |
Q |
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| T |
17582263 |
agcaaattttgtcagataaatcaagcac--atatttgcacttcacaatgtataatgttacaaatgat |
17582327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 17582073 - 17582161
Alignment:
| Q |
10 |
tgtttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatggtaactgca |
98 |
Q |
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| T |
17582073 |
tgtttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatagttcaagagttttgctttctcatccaatatggtaactgca |
17582161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 53896417 - 53896445
Alignment:
| Q |
16 |
cagtgaaaggtatatctgaattaaatcaa |
44 |
Q |
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| T |
53896417 |
cagtgaaaggtatatctgaattaaatcaa |
53896445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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